| Literature DB >> 24368875 |
Petra Borilova Linhartova1, Jan Vokurka2, Hana Poskerova2, Antonin Fassmann2, Lydie Izakovicova Holla3.
Abstract
OBJECTIVES: Periodontitis is an inflammatory disease characterized by connective tissue loss and alveolar bone destruction. Interleukin-8 (IL8) is important in the regulation of the immune response. The aim of this study was to analyze four polymorphisms in the IL8 gene in relation to chronic (CP) and aggressive (AgP) periodontitis.Entities:
Mesh:
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Year: 2013 PMID: 24368875 PMCID: PMC3866791 DOI: 10.1155/2013/342351
Source DB: PubMed Journal: Mediators Inflamm ISSN: 0962-9351 Impact factor: 4.711
Details of SNPs in IL8 detection.
| SNPs | TaqMan SNP genotyping assay ID | Context sequence [VIC/FAM] |
|---|---|---|
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| C_1842904_10 | GCTCTTATGCCTCCACTGGAATTAA[C/T] |
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| C_11748116_10 | TTATCTAGAAATAAAAAAGCATACA[A/T] |
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| C_11748168_10 | TATTCTGCTTTTATAATTTATACCA[G/T] |
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| C_11748169_10 | AACTCTAACTCTTTATATAGGAAGT[C/T] |
Genotype and allele frequencies of IL8 polymorphisms in control and periodontitis subgroups.
| SNP | Genotype | Controls | CP |
| OR | AgP |
| OR |
|---|---|---|---|---|---|---|---|---|
|
| TT | 49 (31.4) | 95 (34.2) | — | 1.00 | 18 (31.0) | — | 1.00 |
| TA | 78 (50.0) | 120 (43.2) | 0.37 | 0.76 (0.47–1.23) | 27 (46.6) | 0.76 | 1.08 (0.49–2.37) | |
| AA | 29 (18.6) | 63 (22.7) | 0.78 | 1.22 (0.67–2.21) | 13 (22.4) | 0.67 | 1.27 (0.47–3.38) | |
| Allele | ||||||||
| T | 176 (56.4) | 310 (55.8) | 0.60 | 1.00 | 62 (53.4) | 0.33 | 1.00 | |
| A | 136 (43.6) | 246 (44.2) | 0.93 (0.69–1.25) | 54 (46.6) | 0.89 (0.55–1.44) | |||
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| TT | 54 (34.6) | 100 (36.0) | — | 1.00 | 20 (34.5) | — | 1.00 |
| TG | 74 (47.4) | 118 (42.4) | 0.58 | 0.86 (0.54–1.39) | 27 (46.6) | 0.74 | 1.15 (0.54–2.45) | |
| GG | 28 (17.9) | 60 (21.6) | 0.67 | 1.28 (0.71–2.31) | 11 (19.0) | 0.92 | 1.00 (0.36–2.82) | |
| Allele | ||||||||
| T | 182 (58.3) | 318 (57.2) | 0.83 | 1.00 | 67 (57.8) | 0.89 | 1.00 | |
| G | 130 (41.7) | 238 (42.8) | 0.91 (0.68–1.23) | 49 (42.2) | 0.99 (0.61–1.62) | |||
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| CC | 55 (35.3) | 103 (37.1) | — | 1.00 | 20 (34.5) | — | 1.00 |
| CT | 76 (48.7) | 121 (43.5) | 0.51 | 0.82 (0.52–1.31) | 27 (46.6) | 0.84 | 1.10 (0.52–2.34) | |
| TT | 25 (16.0) | 54 (19.4) | 0.66 | 1.24 (0.67–2.31) | 11 (19.0) | 0.66 | 1.07 (0.38–3.02) | |
| Allele | ||||||||
| T | 186 (59.6) | 327 (58.8) | 0.44 | 1.00 | 67 (57.8) | 0.68 | 1.00 | |
| C | 126 (40.4) | 229 (41.2) | 1.06 (0.78–1.43) | 49 (42.2) | 1.05 (0.64–1.70) | |||
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| TT | 52 (100.0) | 120 (98.4) | — | 1.00 | 19 (100.0) | — | 1.00 |
| TC | 0 (0.0) | 2 (1.6) | 0.49 | # | 0 (0.0) | 1.00 | # | |
| CC | 0 (0.0) | 0 (0.0) | 1.00 | # | 0 (0.0) | 1.00 | # | |
| Allele | ||||||||
| T | 104 (100.0) | 242 (99.2) | 0.49 | 1.00 | 38 (100.0) | 1.00 | 1.00 | |
| C | 0 (0.0) | 2 (0.8) | # | 0 (0.0) | # | |||
*Differences between individual haplotypes (between controls and CP or controls and AgP) were analyzed using the Fisher exact test.
OR: odds ratio adjusted for age, sex, and smoking in logistic regression, reference categories designated with an OR of 1.0; CI: confidence interval, #nonapplicable (small numbers); #OR not calculated because of the presence of zero values.
Distribution of IL8 haplotypes in the studied groups.
| Haplotypes (alleles of | Controls | CP |
| OR (95% CI) | AgP |
| OR (95% CI) | ||
|---|---|---|---|---|---|---|---|---|---|
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| T | T | C | 162 (51.9) | 293 (52.7) | NS | 0.99 (0.73–1.32) | 62 (53.4) | NS | 1.02 (0.63–1.65) |
| A | G | T | 110 (35.3) | 212 (38.1) | NS | 1.17 (0.86–1.59) | 46 (39.7) | NS | 1.14 (0.70–1.87) |
| A | T | T | 16 (5.1) | 11 (2.0) |
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| 3 (2.6) | NS | 0.62 (0.18–2.20) |
| T | G | C | 14 (4.5) | 11 (2.0) |
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| 2 (1.7) | NS | 0.51 (0.11–2.30) |
| A | G | C | 6 (1.9) | 12 (2.2) | NS | 1.40 (0.47–4.12) | 2 (1.7) | NS | 1.22 (0.23–6.35) |
| A | T | C | 4 (1.3) | 11 (2.0) | NS | 1.79 (0.54–5.90) | 1 (0.9) | NS | 1.01 (0.11–9.29) |
| T | T | T | 0 (0.0) | 3 (0.5) | NS | ∗ | 0 (0.0) | NS | ∗ |
| T | G | T | 0 (0.0) | 3 (0.5) | NS | ∗ | 0 (0.0) | NS | ∗ |
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OR: odds ratio adjusted for age, sex, and smoking in logistic regression CI: confidence intervals.
aDifferences between individual haplotypes (between controls and CP or controls and AgP) were analyzed using the Fisher exact test.
*OR not calculated because of the presence of zero values.
Bold: significant result.
Distribution of IL8 haplotypes (arranged as genotypes) in the studied groups.
| Haplotypes (genotypes of | Controls | CP |
| OR (95% CI) | AgP |
| OR (95% CI) |
|---|---|---|---|---|---|---|---|
| TTC/TTC | 42 (26.9) | 86 (30.9) | NS | 1.18 (0.74–1.87) | 17 (29.3) | NS | 0.98 (0.46–2.09) |
| AGT/TTC | 63 (40.4) | 101 (36.3) | NS | 0.80 (0.52–1.23) | 24 (41.4) | NS | 1.13 (0.57–2.24) |
| ATT/TTC | 6 (3.8) | 3 (1.1) | 0.08 | 0.22 (0.05–1.06) | 2 (3.4) | NS | 1.03 (0.19–5.49) |
| TGC/TTC |
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| 0 (0.0) | NS |
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| AGC/TTC | 5 (3.2) | 6 (2.2) | NS | 0.90 (0.24–3.36) | 1 (1.7) | NS | 0.64 (0.07–6.00) |
| ATC/TTC | 0 (0.0) | 6 (2.2) | 0.08 | ∗ | 1 (1.7) | ∗ | ∗ |
| TTT/TTC | 0 (0.0) | 3 (1.1) | NS | ∗ | 0 (0.0) | ∗ | ∗ |
| TGT/TTC | 0 (0.0) | 1 (0.4) | ∗ | ∗ | 0 (0.0) | ∗ | ∗ |
| AGT/AGT | 20 (12.8) | 47 (16.9) | NS | 1.60 (0.87–2.93) | 10 (17.2) | NS | 1.12 (0.42–3.04) |
| ATT/AGT | 1 (0.6) | 5 (1.8) | NS | 2.12 (0.20–22.08) | 1 (1.7) | ∗ | 3.36 (0.20–55.97) |
| AGT/TGC | 4 (2.6) | 3 (1.1) | NS | 0.31 (0.06–1.52) | 0 (0.0) | NS | ∗ |
| AGT/AGC | 1 (0.6) | 5 (1.8) | NS | 3.28 (0.35–30.98) | 1 (1.7) | ∗ | 5.06 (0.29–87.00) |
| AGT/ATC | 1 (0.6) | 4 (1.4) | NS | 2.52 (0.27–23.83) | 0 (0.0) | ∗ | ∗ |
| ATT/ATT | 4 (2.6) | 1 (0.4) | 0.07 | 0.17 (0.02–1.59) | 0 (0.0) | NS | ∗ |
| TGC/TGC | 3 (1.9) | 3 (1.1) | NS | 0.71 (0.13–3.82) | 1 (1.7) | NS | 1.21 (0.12–12.26) |
| ATT/ATC | 1 (0.6) | 0 (0.0) | ∗ | ∗ | 0 (0.0) | ∗ | ∗ |
| ATC/ATC | 1 (0.6) | 0 (0.0) | ∗ | ∗ | 0 (0.0) | ∗ | ∗ |
| TGT/TGT | 0 (0.0) | 1 (0.4) | ∗ | ∗ | 0 (0.0) | ∗ | ∗ |
| AGC/TGC | 0 (0.0) | 1 (0.4) | ∗ | ∗ | 0 (0.0) | ∗ | ∗ |
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OR: odds ratio adjusted for age, sex, and smoking in logistic regression; CI: confidence intervals.
aDifferences between individual haplotypes (between controls and CP or controls and AgP) were analyzed using the Fisher exact test.
bDifferences between individual haplotypes (between controls and CP or controls and AgP) were analyzed using the χ 2 test.
*OR not calculated because of the presence of zero values.
Bold: significant result.