Literature DB >> 24368593

Crowd-sourced annotation of ecg signals using contextual information.

Tingting Zhu1, Alistair E W Johnson, Joachim Behar, Gari D Clifford.   

Abstract

For medical applications, the ground truth is ascertained through manual labels by clinical experts. However, significant inter-observer variability and various human biases limit accuracy. A probabilistic framework addresses these issues by comparing aggregated human and automated labels to provide a reliable ground truth, with no prior knowledge of the individual performance. As an alternative to median or mean voting strategies, novel contextual features (signal quality and physiology) were introduced to allow the Probabilistic Label Aggregator (PLA) to weight an algorithm or human based on its performance. As a proof of concept, the PLA was applied to QT interval (pro-arrhythmic indicator) estimation from the electrocardiogram using labels from 20 humans and 48 algorithms crowd-sourced from the 2006 PhysioNet/Computing in Cardiology Challenge database. For automatic annotations, the root mean square error of the PLA was 13.97 ± 0.46 ms, significantly outperforming the best Challenge entry (16.36 ms) as well as mean and median voting strategies (17.67 ± 0.56 ms and 14.44 ± 0.52 ms respectively with p < 0.05). When selecting three annotators, the PLA improved the annotation accuracy over median aggregation by 10.7% for human annotators and 14.4% for automated algorithms. The PLA could therefore provide an improved "gold standard" for medical annotation tasks even when ground truth is not available.

Entities:  

Mesh:

Year:  2013        PMID: 24368593     DOI: 10.1007/s10439-013-0964-6

Source DB:  PubMed          Journal:  Ann Biomed Eng        ISSN: 0090-6964            Impact factor:   3.934


  9 in total

1.  An open source benchmarked toolbox for cardiovascular waveform and interval analysis.

Authors:  Adriana N Vest; Giulia Da Poian; Qiao Li; Chengyu Liu; Shamim Nemati; Amit J Shah; Gari D Clifford
Journal:  Physiol Meas       Date:  2018-10-11       Impact factor: 2.833

2.  False alarm reduction in critical care.

Authors:  Gari D Clifford; Ikaro Silva; Benjamin Moody; Qiao Li; Danesh Kella; Abdullah Chahin; Tristan Kooistra; Diane Perry; Roger G Mark
Journal:  Physiol Meas       Date:  2016-07-25       Impact factor: 2.833

3.  AF Classification from a Short Single Lead ECG Recording: the PhysioNet/Computing in Cardiology Challenge 2017.

Authors:  Gari D Clifford; Chengyu Liu; Benjamin Moody; Li-Wei H Lehman; Ikaro Silva; Qiao Li; A E Johnson; Roger G Mark
Journal:  Comput Cardiol (2010)       Date:  2018-04-05

4.  Non-invasive fetal ECG analysis.

Authors:  Gari D Clifford; Ikaro Silva; Joachim Behar; George B Moody
Journal:  Physiol Meas       Date:  2014-07-29       Impact factor: 2.833

5.  Unity Is Intelligence: A Collective Intelligence Experiment on ECG Reading to Improve Diagnostic Performance in Cardiology.

Authors:  Luca Ronzio; Andrea Campagner; Federico Cabitza; Gian Franco Gensini
Journal:  J Intell       Date:  2021-04-01

6.  Stage-independent, single lead EEG sleep spindle detection using the continuous wavelet transform and local weighted smoothing.

Authors:  Athanasios Tsanas; Gari D Clifford
Journal:  Front Hum Neurosci       Date:  2015-04-08       Impact factor: 3.169

7.  Machine Learning and Decision Support in Critical Care.

Authors:  Alistair E W Johnson; Mohammad M Ghassemi; Shamim Nemati; Katherine E Niehaus; David A Clifton; Gari D Clifford
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2016-01-25       Impact factor: 10.961

8.  Atrial fibrillation detection in outpatient electrocardiogram monitoring: An algorithmic crowdsourcing approach.

Authors:  Ali Bahrami Rad; Conner Galloway; Daniel Treiman; Joel Xue; Qiao Li; Reza Sameni; Dave Albert; Gari D Clifford
Journal:  PLoS One       Date:  2021-11-16       Impact factor: 3.240

9.  A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates.

Authors:  Philip W Fowler; Carla Wright; Helen Spiers; Tingting Zhu; Elisabeth M L Baeten; Sarah W Hoosdally; Ana L Gibertoni Cruz; Aysha Roohi; Samaneh Kouchaki; Timothy M Walker; Timothy E A Peto; Grant Miller; Chris Lintott; David Clifton; Derrick W Crook; A Sarah Walker
Journal:  Elife       Date:  2022-05-19       Impact factor: 8.713

  9 in total

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