| Literature DB >> 24367763 |
Wen-Hui Su1, Allan Hildesheim2, Yu-Sun Chang3.
Abstract
Nasopharyngeal carcinoma (NPC) is an Epstein-Barr virus (EBV) associated tumor. In addition to EBV, host genetic factors are believed to be important determinants of NPC risk. Of all genes studies to date, human leukocyte antigen (HLA) genes have shown the most consistent evidence for association with NPC, both from candidate-gene studies and genome-wide association studies (GWAS). In this report we summarize results from recent studies that evaluated the association between HLA and NPC, and discuss whether findings reflect direct causal associations for HLA genes and/or indirect associations that mark causal associations with other genes in the gene-dense major histocompatibility (MHC) region where HLA resides. We also compare GWAS results across cancer sites for which strong hits in the MHC region were observed to generate new hypotheses regarding the role of HLA genes in the development of EBV-associated cancers such as NPC. Of note, we report that MHC associations for EBV-associated cancers (NPC, EBV+ Hodgkin lymphoma) are driven by HLA class I genes. In contrast, MHC associations for other viral-associated cancers (cervical cancer, hepatocellular carcinoma) or other hematopoetic cancers (EBV- Hodgkin lymphoma, leukemia, non-Hodgkin lymphomas) are driven by HLA class II genes, and those for other solid tumors with less clear links to infections (lung, testicular, prostate cancers) are driven by non-HLA genes in the MHC region. Future studies should aim to better understand these patterns.Entities:
Keywords: EBV; HLA antigens; genome-wide association study; infection associated cancers; nasopharyngeal carcinoma
Year: 2013 PMID: 24367763 PMCID: PMC3856645 DOI: 10.3389/fonc.2013.00299
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Figure 1GWAS results map in the HLA-A locus. Top: Triangles and diamonds dots indicate the P values from different GWASs on a minus logarithmic scale according to the chromosome location of the SNPs. Different studies are labeled with different colors. Red: NPCa (10); Green: NPCb (11); Blue: NPCc (12); Orange: EBV+ HL (21). The solid triangles indicate significant SNPs reported in GWASs. The hollow triangles indicate other SNPs listed in the supplementary documents. The solid diamonds indicate significant amino acids located within the HLA genes (12). Bottom: Detailed LD structure depicted in HaploView using control samples from the NPCa GWAS (10). The increasing intensities of red represent lower D′ values.
Cancer GWAS significant signals located in chromosome 6p21 MHC region.
| Disease | Year | No. of cases/No. of controls | HLA class I genes | HLA class II genes | Other MHC genes | Reference | |||
|---|---|---|---|---|---|---|---|---|---|
| HLA-DR | HLA-DQ | HLA-DP | |||||||
| EBV-related tumors | |||||||||
| Nasopharyngeal carcinoma | 2009 | 111/260 | ( | ||||||
| Nasopharyngeal carcinoma | 2009 | 277/285 | rs2517713 | ( | |||||
| rs2975042 | |||||||||
| Nasopharyngeal carcinoma | 2010 | 1,583/1,894 | rs2860580 | rs2894207 | rs28421666 | ( | |||
| Nasopharyngeal carcinoma | 2012 | 1,405/1,650 | rs417162 | ( | |||||
| Hodgkin’s lymphoma | 2011 | 589/5,199 | rs6903608 | ( | |||||
| Hodgkin’s lymphoma | 2012 | 1,200/6,417 | rs2395185 | ( | |||||
| EBV-positive Hodgkin’s lymphoma | rs2734986 | ||||||||
| EBV-negative Hodgkin’s lymphoma | rs6903608 | ||||||||
| Nodular sclerosis Hodgkin’s lymphoma | 2011 | 393/3,315 | rs204999 rs9268528 | ( | |||||
| Other virus-related tumors | |||||||||
| Hepatocellular carcinoma | 2011 | 180/271 | ( | ||||||
| HCV-related hepatocellular carcinoma | 2011 | 721/2,890 | rs9275572 | ( | |||||
| HBV-related hepatocellular carcinoma | 2012 | 1,538/1,465 | rs9272105 | ( | |||||
| HBV-related hepatocellular carcinoma | 2013 | 1,161/1,353 | rs9275319 | ( | |||||
| HBV-related hepatocellular carcinoma | 2013 | 971/1,938 | rs9269081 | rs2856718, rs7453920 | rs9277535, rs3077 | ( | |||
| Cervical Cancer | 2013 | 1,034/3,948 | rs9272143 | rs9272143 | rs3117027 | ( | |||
| Cervical Cancer | 2013 | 1,364/3,028 | rs4282438 | ( | |||||
| Other hematopoetic tumors | |||||||||
| Follicular lymphoma | 2009 | 189/592 | rs6457327 | ( | |||||
| Follicular lymphoma | 2010 | 681/750 | rs10484561 | ( | |||||
| Follicular lymphoma | 2011 | 379/791 | rs2647012 | ( | |||||
| Chronic lymphocytic leukemia | 2010 | 407/296 | rs674313 | rs9272535 | ( | ||||
| Chronic lymphocytic leukemia | 2012 | 1,121/3,745 | ( | ||||||
| Chronic lymphocytic leukemia | 2013 | 3,100/7,667 | rs674313 | rs9273012, rs9273363 | ( | ||||
| Lymphoma | 2013 | 1,245/2596 | rs4530903 | rs4530903 | ( | ||||
| Other solid tumors | |||||||||
| Lung cancer | 2008 | 1,952/1,438 | ( | ||||||
| Lung cancer | 2013 | 5,510/4,544 | rs2395185 | ( | |||||
| Lung adenocarcinoma | 2009 | 5,739/5,848 | ( | ||||||
| Lung adenocarcinoma | 2012 | 1,695/5,333 | ( | ||||||
| Testicular germ cell tumor | 2009 | 730/1,435 | ( | ||||||
| Prostate cancer | 2011 | 6,621/6,939 | ( | ||||||
| Prostate cancer | 2013 | 11,085/11,463 | ( | ||||||
| Multiple cancers | 2012 | 5,368/4,006 | ( | ||||||
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