| Literature DB >> 24367489 |
Wei-Yi Hsu1, Chao-Jung Chen2, Yu-Chuen Huang3, Fuu-Jen Tsai4, Long-Bin Jeng5, Chien-Chen Lai6.
Abstract
Urinary nucleosides are associated with many types of cancer. In this study, six targeted urinary nucleosides, namely adenosine, cytidine, 3-methylcytidine, 1-methyladenosine, inosine, and 2-deoxyguanosine, were chosen to evaluate their role as biomarkers of four different types of cancer: lung cancer, gastric cancer, colon cancer, and breast cancer. Urine samples were purified using solid-phase extraction (SPE) and then analyzed using high-performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS). The Mann-Whitney U test and Principal Component Analysis (PCA) were used to compare differences in urinary nucleosides between patients with one of four types of cancer and healthy controls. The diagnostic sensitivity of single nucleosides for different types of cancer ranged from 14% to 69%. In contrast, the diagnostic sensitivity of a set of six nucleosides ranged from 37% to 69%. The false-positive identification rate associated with the set of six nucleosides in urine was less than 2% compared with that of less than 5% for a single nucleoside. Furthermore, combining the set of six urinary nucleosides with carcinoembryonic antigen improved the diagnostic sensitivity for colon cancer. In summary, the study show that a set of six targeted nucleosides is a good diagnostic marker for breast and colon cancers but not for lung and gastric cancers.Entities:
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Year: 2013 PMID: 24367489 PMCID: PMC3868621 DOI: 10.1371/journal.pone.0081701
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Clinical characteristic of colon and lung cancer patients.
| Patient no. | Sex | Age | TMN Stage | Cell type |
| 1. Gastric cancer patients | ||||
| G2 | M | 61 | T3 N0 M0 Stage II | adenocarcinoma |
| G4 | M | 69 | T3 N2 M0 Stage IIIB | adenocarcinoma |
| G6 | M | 78 | T3 N1 M0 Stage IIIA | adenocarcinoma |
| G7 | M | 65 | Tx Nx M1 Stage IV | adenocarcinoma |
| G8 | M | 73 | T3 N2 M0 Stage IIIB | adenocarcinoma |
| G9 | F | 56 | T4a Nx M1 Stage IV | adenocarcinoma |
| G10 | F | 82 | T4b Nx Mx Stage x | adenocarcinoma |
| G11 | M | 65 | T2a N2 M0 Stage IIIA | adenocarcinoma |
| G14 | M | 53 | T3 N0 M0 Stage II | adenocarcinoma |
| G16 | M | 59 | T2 N1 M0 Stage II | adenocarcinoma |
| G17 | M | 50 | T1 N0 M0 Stage IA | adenocarcinoma |
| G20 | M | 82 | T3 N0 M0 Stage II | adenocarcinoma |
| G21 | F | 78 | T1 N0 M0 Stage IA | adenocarcinoma |
| G27 | M | 54 | T4 N2 M0 Stage IV | adenocarcinoma |
| G28 | M | 81 | Tx Nx M1 Stage IV | adenocarcinoma |
| 2. Lung cancer patients | ||||
| L1 | M | 74 | T4 N0 Mx Stage IIIB | squamous cell |
| L2 | M | 73 | T3 N2 M1 Stage IV | squamous cell |
| L3 | M | 71 | limited disease | small cell |
| L4 | F | 56 | T2 N0 M0 Stage IB | adenocarcinoma |
| L5 | M | 56 | T4 N2 Mx Stage IIIB | adenocarcinoma |
| L6 | F | 58 | T2 N3 M1 Stage IV | adenocarcinoma |
| L7 | M | 68 | T4 N3 Mx Stage IIIB | adenocarcinoma |
| L8 | F | 61 | T2 Nx M1 Stage IV | adenocarcinoma |
| L9 | M | 72 | T4 N3 Mx Stage IIIB | squamous cell |
| L10 | F | 55 | T4 N2 M1 Stage IV | small cell |
| L12 | M | 49 | T4 N1 M0 Stage IIIB | squamous cell |
| L13 | F | 43 | T1 N2 M1 Stage IV | adenocarcinoma |
| L14 | M | 66 | T3 N2 M1 Stage IV | adenocarcinoma |
| L15 | F | 54 | T2 N1 M0 Stage IV | squamous cell |
| L16 | M | 64 | T2 Nx M1 Stage IV | adenocarcinoma |
| L17 | M | 60 | T1 N3 M1 Stage IV | adenocarcinoma |
| L18 | M | 50 | T2 N3 M1 Stage IV | adenocarcinoma |
| L20 | F | 46 | T3 N2 M1 Stage IV | adeno-squamous cell |
| L21 | M | 81 | T4 N2 M0 Stage IIIB | squamous cell |
| L22 | M | 68 | T4 N3 Mx Stage IIIB | squamous cell |
| L23 | M | 65 | T2 N2 M1 Stage IV | adenocarcinoma |
| L24 | F | 67 | T4 Nx M1 Stage IV | adenocarcinoma |
| L25 | F | 66 | Stage IV | adeno-squamous cell |
| L26 | F | 64 | T2 N0 M0 Stage IIIB | adenocarcinoma |
| L29 | M | 70 | T2 N3 M1 Stage IV | adenocarcinoma |
| L30 | F | 42 | T2 N3 M1 Stage IV | adenocarcinoma |
| L31 | M | 42 | T2 N2 M1 Stage IV | squamous cell |
Figure 1HPLC spectra of six nucleosides in pooled urine from cancer patients.
Insets show the SRM transition mass spectra of each nucleoside.
Variation of individual nucleosides levels in the urine samples from normal controls and cancer patients.
| Normal controls (n = 45) | All cancer patients (n = 104) | |||||||
| Nucleosides | Ave±SD | Median | Range | Ave±SD | Median | Range |
| Fold change |
| Cytidine | 1.25±0.83 | 0.96 | 0.28–4.17 | 2.29±1.78 | 1.90 | 0.14–8.8 |
| 1.9 |
| 3-methylcytidine | 0.81±0.27 | 0.76 | 0.28–1.38 | 1.19±0.8 | 1.07 | 0.22–5.88 |
| 1.5 |
| 1-methyladenosine | 6.47±2.47 | 6.59 | 2.47–13.14 | 9.16±5.19 | 8.42 | 1.22–26.28 |
| 1.4 |
| 2-deoxyguanosine | 0.15±0.13 | 0.09 | 0.03–0.55 | 0.22±0.24 | 0.13 | 0.02–1.18 | 0.41 | 1.7 |
| Adenosine | 2.07±0.87 | 1.8 | 0.75–4.11 | 3.88±2.62 | 3.31 | 0.3–15.23 |
| 1.9 |
| Inosine | 0.3±0.32 | 0.21 | 0.03–1.88 | 0.64±0.77 | 0.35 | 0.04–5.02 |
| 2.0 |
Fold change calculated by average.
p-Value: Mann-Whitney U test.
Variation of individual nucleosides levels in the urine samples from female and male normal controls.
| Normal controls | |||||||
| Female (n = 25) | Mmale (n = 20) | ||||||
| Nucleosides | Ave±SD | Median | Range | Ave±SD | Median | Range |
|
| Cytidine | 1.54±0.92 | 1.31 | 0.28–4.17 | 0.88±0.52 | 0.72 | 0.32–2.49 |
|
| 3-methylcytidine | 0.86±0.27 | 0.81 | 0.5–1.38 | 0.75±0.27 | 0.70 | 0.28–1.34 | 0.21 |
| 1-methyladenosine | 7.41±2.59 | 7.34 | 2.93–13.14 | 5.28±1.73 | 5.37 | 2.47–8.12 |
|
| 2-deoxyguanosine | 0.19±0.17 | 0.15 | 0.03–0.55 | 0.11±0.07 | 0.08 | 0.03–0.23 | 0.39 |
| Adenosine | 2.43±0.9 | 2.55 | 0.92–4.11 | 1.61±0.57 | 1.50 | 0.75–3.18 |
|
| Inosine | 0.32±0.22 | 0.28 | 0.06–0.9 | 0.27±0.42 | 0.16 | 0.03–1.88 |
|
p-Value: Mann-Whitney U test.
Variation of individual nucleosides levels in the urine samples from breast, lung, gastric and colon cancer patients.
| Breast cancer (n = 36) | Lung cancer (n = 27) | |||||||||
| Nucleosides | Ave±SD | Median | Range |
| Fold change | Ave±SD | Median | Range |
| Fold change |
| Cytidine | 3.01±2.18 | 2.49 | 0.14–8.8 |
| 1.95 | 1.59±1.15 | 1.43 | 0.28–5.99 | 0.17 | 1.27 |
| 3-methylcytidine | 1.57±0.74 | 1.56 | 0.3–3.18 |
| 1.81 | 0.97±0.38 | 0.9 | 0.45–1.66 | 0.11 | 1.20 |
| 1-methyladenosine | 9.37±5.06 | 9.09 | 1.22–19.12 | 0.21 | 1.26 | 7.49±2.76 | 7.45 | 3.42–14.04 | 0.16 | 1.16 |
| 2-deoxyguanosine | 0.24±0.18 | 0.16 | 0.08–0.75 | 0.33 | 1.31 | 0.32±0.34 | 0.15 | 0.03–1.18 | 0.11 | 2.13 |
| Adenosine | 3.34±1.84 | 3.20 | 0.3–7.38 | 0.13 | 1.37 | 2.84±1.39 | 2.62 | 1.05–5.68 |
| 1.38 |
| Inosine | 0.94±0.74 | 0.82 | 0.11–3.36 |
| 2.90 | 0.36±0.3 | 0.29 | 0.04–1.06 | 0.38 | 1.20 |
Compared with "female normal controls".
Compared with "total normal controls".
Fold change calculated by average.
p-Value: Mann-Whitney U test.
Figure 2Results of principal component analysis showing the distribution of cancers and normal controls.
(A) All cancer; (B) Breast cancer, (C) Lung cancer; (D) Gastric cancer and (E) Colon cancer. Black triangles mark normal controls, while the white circle marks each cancer group.
Figure 3Diagnostic sensitivity and false-positive identify for cancers provided by a single nucleoside and the set of six nucleosides.
(A) All cancer; (B) Colon cancer, (C) Breast cancer; (D) Lung cancer and (E) Gastric cancer.
Figure 4Diagnostic sensitivity for colon cancers provided by combination of serum carcinoembryonic antigen (CEA>5 ng/ul) with urinary (A) adenosine or (B) set of six nucleosides.