Literature DB >> 24366340

Historical landmarks of autophagy research.

Yoshinori Ohsumi1.   

Abstract

The year of 2013 marked the 50th anniversary of C de Duve's coining of the term "autophagy" for the degradation process of cytoplasmic constituents in the lysosome/vacuole. This year we regretfully lost this great scientist, who contributed much during the early years of research to the field of autophagy. Soon after the discovery of lysosomes by de Duve, electron microscopy revealed autophagy as a means of delivering intracellular components to the lysosome. For a long time after the discovery of autophagy, studies failed to yield any significant advances at a molecular level in our understanding of this fundamental pathway of degradation. The first breakthrough was made in the early 1990s, as autophagy was discovered in yeast subjected to starvation by microscopic observation. Next, a genetic effort to address the poorly understood problem of autophagy led to the discovery of many autophagy-defective mutants. Subsequent identification of autophagy-related genes in yeast revealed unique sets of molecules involved in membrane dynamics during autophagy. ATG homologs were subsequently found in various organisms, indicating that the fundamental mechanism of autophagy is well conserved among eukaryotes. These findings brought revolutionary changes to research in this field. For instance, the last 10 years have seen remarkable progress in our understanding of autophagy, not only in terms of the molecular mechanisms of autophagy, but also with regard to its broad physiological roles and relevance to health and disease. Now our knowledge of autophagy is dramatically expanding day by day. Here, the historical landmarks underpinning the explosion of autophagy research are described with a particular focus on the contribution of yeast as a model organism.

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Year:  2013        PMID: 24366340      PMCID: PMC3879711          DOI: 10.1038/cr.2013.169

Source DB:  PubMed          Journal:  Cell Res        ISSN: 1001-0602            Impact factor:   25.617


  111 in total

1.  Atg21 is a phosphoinositide binding protein required for efficient lipidation and localization of Atg8 during uptake of aminopeptidase I by selective autophagy.

Authors:  Per E Strømhaug; Fulvio Reggiori; Ju Guan; Chao-Wen Wang; Daniel J Klionsky
Journal:  Mol Biol Cell       Date:  2004-05-21       Impact factor: 4.138

2.  Atg32 is a tag for mitochondria degradation in yeast.

Authors:  Tomotake Kanki; Daniel J Klionsky
Journal:  Autophagy       Date:  2009-11-06       Impact factor: 16.016

3.  Hierarchy of Atg proteins in pre-autophagosomal structure organization.

Authors:  Kuninori Suzuki; Yuka Kubota; Takayuki Sekito; Yoshinori Ohsumi
Journal:  Genes Cells       Date:  2007-02       Impact factor: 1.891

4.  Leupeptin-induced appearance of partial fragment of betaine homocysteine methyltransferase during autophagic maturation in rat hepatocytes.

Authors:  N Furuya; T Kanazawa; S Fujimura; T Ueno; E Kominami; M Kadowaki
Journal:  J Biochem       Date:  2001-02       Impact factor: 3.387

5.  Formation of the approximately 350-kDa Apg12-Apg5.Apg16 multimeric complex, mediated by Apg16 oligomerization, is essential for autophagy in yeast.

Authors:  Akiko Kuma; Noboru Mizushima; Naotada Ishihara; Yoshinori Ohsumi
Journal:  J Biol Chem       Date:  2002-03-15       Impact factor: 5.157

6.  Organization of the pre-autophagosomal structure responsible for autophagosome formation.

Authors:  Tomoko Kawamata; Yoshiaki Kamada; Yukiko Kabeya; Takayuki Sekito; Yoshinori Ohsumi
Journal:  Mol Biol Cell       Date:  2008-02-20       Impact factor: 4.138

7.  Architecture of the Atg17 complex as a scaffold for autophagosome biogenesis.

Authors:  Michael J Ragusa; Robin E Stanley; James H Hurley
Journal:  Cell       Date:  2012-12-06       Impact factor: 41.582

8.  Protein kinase-dependent effects of okadaic acid on hepatocytic autophagy and cytoskeletal integrity.

Authors:  I Holen; P B Gordon; P O Seglen
Journal:  Biochem J       Date:  1992-06-15       Impact factor: 3.857

9.  Quantitative correlation between proteolysis and macro- and microautophagy in mouse hepatocytes during starvation and refeeding.

Authors:  G E Mortimore; N J Hutson; C A Surmacz
Journal:  Proc Natl Acad Sci U S A       Date:  1983-04       Impact factor: 11.205

10.  Divergent modes of autophagy in the methylotrophic yeast Pichia pastoris.

Authors:  D L Tuttle; W A Dunn
Journal:  J Cell Sci       Date:  1995-01       Impact factor: 5.285

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  336 in total

Review 1.  Autophagy and autophagy-related proteins in the immune system.

Authors:  Shusaku T Shibutani; Tatsuya Saitoh; Heike Nowag; Christian Münz; Tamotsu Yoshimori
Journal:  Nat Immunol       Date:  2015-10       Impact factor: 25.606

Review 2.  Autophagy inhibitors.

Authors:  Benoit Pasquier
Journal:  Cell Mol Life Sci       Date:  2015-12-11       Impact factor: 9.261

3.  Autophagosome biogenesis: From membrane growth to closure.

Authors:  Thomas J Melia; Alf H Lystad; Anne Simonsen
Journal:  J Cell Biol       Date:  2020-06-01       Impact factor: 10.539

4.  Autophagy is activated to protect against podocyte injury in adriamycin-induced nephropathy.

Authors:  Mixuan Yi; Lei Zhang; Yu Liu; Man J Livingston; Jian-Kang Chen; N Stanley Nahman; Fuyou Liu; Zheng Dong
Journal:  Am J Physiol Renal Physiol       Date:  2017-04-12

Review 5.  Mechanistic Insights into the Role of Atg11 in Selective Autophagy.

Authors:  Katarzyna Zientara-Rytter; Suresh Subramani
Journal:  J Mol Biol       Date:  2019-06-22       Impact factor: 5.469

Review 6.  Roles for neuronal and glial autophagy in synaptic pruning during development.

Authors:  Ori J Lieberman; Avery F McGuirt; Guomei Tang; David Sulzer
Journal:  Neurobiol Dis       Date:  2018-04-28       Impact factor: 5.996

7.  HMGB1 promotes ductular reaction and tumorigenesis in autophagy-deficient livers.

Authors:  Bilon Khambu; Nazmul Huda; Xiaoyun Chen; Daniel J Antoine; Yong Li; Guoli Dai; Ulrike A Köhler; Wei-Xing Zong; Satoshi Waguri; Sabine Werner; Tim D Oury; Zheng Dong; Xiao-Ming Yin
Journal:  J Clin Invest       Date:  2018-05-07       Impact factor: 14.808

8.  Increased PKR level in human CADASIL brains.

Authors:  Emmanuel Cognat; Marion Tible; Ilyes Methnani; Hugues Chabriat; Homa Adle-Biassette; Jacques Hugon; Claire Paquet
Journal:  Virchows Arch       Date:  2018-08-02       Impact factor: 4.064

9.  Pex3 confines pexophagy receptor activity of Atg36 to peroxisomes by regulating Hrr25-mediated phosphorylation and proteasomal degradation.

Authors:  Sota Meguro; Xizhen Zhuang; Hiromi Kirisako; Hitoshi Nakatogawa
Journal:  J Biol Chem       Date:  2020-09-21       Impact factor: 5.157

Review 10.  Autophagy as a regulator of cardiovascular redox homeostasis.

Authors:  Ye Yan; Toren Finkel
Journal:  Free Radic Biol Med       Date:  2016-12-07       Impact factor: 7.376

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