| Literature DB >> 24361273 |
Martin Schwalbe1, Valéry Ozenne2, Stefan Bibow3, Mariusz Jaremko3, Lukasz Jaremko3, Michal Gajda3, Malene Ringkjøbing Jensen2, Jacek Biernat4, Stefan Becker3, Eckhard Mandelkow4, Markus Zweckstetter5, Martin Blackledge6.
Abstract
The development of molecular descriptions of intrinsically disordered proteins (IDPs) is essential for elucidating conformational transitions that characterize common neurodegenerative disorders. We use nuclear magnetic resonance, small angle scattering, and molecular ensemble approaches to characterize the IDPs Tau and α-synuclein. Ensemble descriptions of IDPs are highly underdetermined due to the inherently large number of degrees of conformational freedom compared with available experimental measurements. Using extensive cross-validation we show that five different types of independent experimental parameters are predicted more accurately by selected ensembles than by statistical coil descriptions. The improvement increases in regions whose local sampling deviates from statistical coil, validating the derived conformational description. Using these approaches we identify enhanced polyproline II sampling in aggregation-nucleation sites, supporting suggestions that this region of conformational space is important for aggregation.Entities:
Mesh:
Substances:
Year: 2013 PMID: 24361273 DOI: 10.1016/j.str.2013.10.020
Source DB: PubMed Journal: Structure ISSN: 0969-2126 Impact factor: 5.006