Literature DB >> 24361273

Predictive atomic resolution descriptions of intrinsically disordered hTau40 and α-synuclein in solution from NMR and small angle scattering.

Martin Schwalbe1, Valéry Ozenne2, Stefan Bibow3, Mariusz Jaremko3, Lukasz Jaremko3, Michal Gajda3, Malene Ringkjøbing Jensen2, Jacek Biernat4, Stefan Becker3, Eckhard Mandelkow4, Markus Zweckstetter5, Martin Blackledge6.   

Abstract

The development of molecular descriptions of intrinsically disordered proteins (IDPs) is essential for elucidating conformational transitions that characterize common neurodegenerative disorders. We use nuclear magnetic resonance, small angle scattering, and molecular ensemble approaches to characterize the IDPs Tau and α-synuclein. Ensemble descriptions of IDPs are highly underdetermined due to the inherently large number of degrees of conformational freedom compared with available experimental measurements. Using extensive cross-validation we show that five different types of independent experimental parameters are predicted more accurately by selected ensembles than by statistical coil descriptions. The improvement increases in regions whose local sampling deviates from statistical coil, validating the derived conformational description. Using these approaches we identify enhanced polyproline II sampling in aggregation-nucleation sites, supporting suggestions that this region of conformational space is important for aggregation.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24361273     DOI: 10.1016/j.str.2013.10.020

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  63 in total

1.  Improved validation of IDP ensembles by one-bond Cα-Hα scalar couplings.

Authors:  Vytautas Gapsys; Raghavendran L Narayanan; ShengQi Xiang; Bert L de Groot; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2015-10-03       Impact factor: 2.835

2.  Transient β-hairpin formation in α-synuclein monomer revealed by coarse-grained molecular dynamics simulation.

Authors:  Hang Yu; Wei Han; Wen Ma; Klaus Schulten
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

Review 3.  14-3-3/Tau Interaction and Tau Amyloidogenesis.

Authors:  Yuwen Chen; Xingyu Chen; Zhiyang Yao; Yuqi Shi; Junwen Xiong; Jingjing Zhou; Zhengding Su; Yongqi Huang
Journal:  J Mol Neurosci       Date:  2019-05-06       Impact factor: 3.444

4.  A pH-dependent switch promotes β-synuclein fibril formation via glutamate residues.

Authors:  Gina M Moriarty; Michael P Olson; Tamr B Atieh; Maria K Janowska; Sagar D Khare; Jean Baum
Journal:  J Biol Chem       Date:  2017-07-14       Impact factor: 5.157

Review 5.  Emerging applications of small angle solution scattering in structural biology.

Authors:  Barnali N Chaudhuri
Journal:  Protein Sci       Date:  2015-02-12       Impact factor: 6.725

6.  In vitro 0N4R tau fibrils contain a monomorphic β-sheet core enclosed by dynamically heterogeneous fuzzy coat segments.

Authors:  Aurelio J Dregni; Venkata S Mandala; Haifan Wu; Matthew R Elkins; Harrison K Wang; Ivan Hung; William F DeGrado; Mei Hong
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-29       Impact factor: 11.205

7.  Structural Characterization of N-WASP Domain V Using MD Simulations with NMR and SAXS Data.

Authors:  Maud Chan-Yao-Chong; Célia Deville; Louise Pinet; Carine van Heijenoort; Dominique Durand; Tâp Ha-Duong
Journal:  Biophys J       Date:  2019-02-26       Impact factor: 4.033

8.  Using chemical shifts to generate structural ensembles for intrinsically disordered proteins with converged distributions of secondary structure.

Authors:  F Marty Ytreberg; Wade Borcherds; Hongwei Wu; Gary W Daughdrill
Journal:  Intrinsically Disord Proteins       Date:  2015-02-03

9.  Dihedral angle preferences of amino acid residues forming various non-local interactions in proteins.

Authors:  Konda Mani Saravanan; Samuel Selvaraj
Journal:  J Biol Phys       Date:  2017-06-02       Impact factor: 1.365

10.  Remodeling of the conformational ensemble of the repeat domain of tau by an aggregation enhancer.

Authors:  Elias Akoury; Marco D Mukrasch; Jacek Biernat; Katharina Tepper; Valery Ozenne; Eckhard Mandelkow; Martin Blackledge; Markus Zweckstetter
Journal:  Protein Sci       Date:  2016-03-24       Impact factor: 6.725

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