Literature DB >> 24353610

The terminator "Non-sense mediate mRNA decay": Its role in the termination of intron containing a premature termination codon.

Younis Skaik.   

Abstract

Entities:  

Year:  2013        PMID: 24353610      PMCID: PMC3809266          DOI: 10.12669/pjms.292.3429

Source DB:  PubMed          Journal:  Pak J Med Sci        ISSN: 1681-715X            Impact factor:   1.088


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Human genes are composed of exons and interrupted by introns that must be removed by splicing to create a translatable mRNA. Alternative splicing is a vital pathway to regulate gene expression and increase the protein diversity.[1],[2] In addition to skipping and inclusion of variable exons and usage of alternative splice sites,[3] intron retention is a third example of alternative splicing, whereby an intron sequence is retained or skipped in the mature mRNA transcript.[4] Notwithstanding intron retention potentially affects mRNA transport to the cytoplasm[5] and can insert a premature termination codon (PTC) and hence its degradation by the terminator (Non-sense mediate mRNA decay),[6] there is an evidence for mRNAs that containing intron and are encoding biologically active proteins.[4] The markedly increased alternative splicing of genes in human cancers[7],[8] sheds the light on the possible pathways that might explain the exon containing PCT and whether they are sensitive or resistant to trigger the terminator.[9] However, to my knowledge, there are no studies that investigated the stealth pathway that the mRNAs transcripts intron-containing PTC[10],[11] use to escape the radar (terminator). Hence, I would like to address the importance of such studies which will lead to therapeutic options which could suppress the production of the alternative spliced proteins through modulating and strengthen the terminator role.
  11 in total

Review 1.  Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology.

Authors:  D L Black
Journal:  Cell       Date:  2000-10-27       Impact factor: 41.582

2.  The RNA binding protein YB-1 binds A/C-rich exon enhancers and stimulates splicing of the CD44 alternative exon v4.

Authors:  E Stickeler; S D Fraser; A Honig; A L Chen; S M Berget; T A Cooper
Journal:  EMBO J       Date:  2001-07-16       Impact factor: 11.598

Review 3.  The evolving roles of alternative splicing.

Authors:  Liana F Lareau; Richard E Green; Rajiv S Bhatnagar; Steven E Brenner
Journal:  Curr Opin Struct Biol       Date:  2004-06       Impact factor: 6.809

Review 4.  Alternative splicing: new insights from global analyses.

Authors:  Benjamin J Blencowe
Journal:  Cell       Date:  2006-07-14       Impact factor: 41.582

5.  A naturally occurring truncated beta3 integrin in tumor cells: native anti-integrin involved in tumor cell motility.

Authors:  Rongxian Jin; Mohit Trikha; Yinlong Cai; David Grignon; Kenneth V Honn
Journal:  Cancer Biol Ther       Date:  2007-07-07       Impact factor: 4.742

Review 6.  Alternative splicing: an emerging topic in molecular and clinical oncology.

Authors:  María J Pajares; Teresa Ezponda; Raúl Catena; Alfonso Calvo; Ruben Pio; Luis M Montuenga
Journal:  Lancet Oncol       Date:  2007-04       Impact factor: 41.316

7.  A quantitative analysis of intron effects on mammalian gene expression.

Authors:  Ajit Nott; Shlomo H Meislin; Melissa J Moore
Journal:  RNA       Date:  2003-05       Impact factor: 4.942

Review 8.  Alternative splicing in cancer: noise, functional, or systematic?

Authors:  Rolf I Skotheim; Matthias Nees
Journal:  Int J Biochem Cell Biol       Date:  2007-03-01       Impact factor: 5.085

9.  Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.

Authors:  Maria Kalyna; Craig G Simpson; Naeem H Syed; Dominika Lewandowska; Yamile Marquez; Branislav Kusenda; Jacqueline Marshall; John Fuller; Linda Cardle; Jim McNicol; Huy Q Dinh; Andrea Barta; John W S Brown
Journal:  Nucleic Acids Res       Date:  2011-11-29       Impact factor: 16.971

10.  Sequence features responsible for intron retention in human.

Authors:  Noboru Jo Sakabe; Sandro José de Souza
Journal:  BMC Genomics       Date:  2007-02-26       Impact factor: 3.969

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