Literature DB >> 24353352

Systematic coarse-graining of spectrin-level red blood cell models.

Dmitry A Fedosov1, Bruce Caswell2, George Em Karniadakis1.   

Abstract

We present a rigorous procedure to derive coarse-grained red blood cell (RBC) models, which yield accurate mechanical response. Based on a semi-analytic theory the linear and nonlinear elastic properties of healthy and infected RBCs in malaria can be matched with those obtained in optical tweezers stretching experiments. The present analysis predicts correctly the membrane Young's modulus in contrast to about 50% error in predictions by previous models. In addition, we develop a stress-free model which avoids a number of pitfalls of existing RBC models, such as non-smooth or poorly controlled equilibrium shape and dependence of the mechanical properties on the initial triangulation quality. Here we employ dissipative particle dynamics for the implementation but the proposed model is general and suitable for use in many existing continuum and particle-based numerical methods.

Entities:  

Keywords:  Atomistic modeling; Dissipative particle dynamics; Spectrin model

Year:  2010        PMID: 24353352      PMCID: PMC3864857          DOI: 10.1016/j.cma.2010.02.001

Source DB:  PubMed          Journal:  Comput Methods Appl Mech Eng        ISSN: 0045-7825            Impact factor:   6.756


  23 in total

1.  Deformation-enhanced fluctuations in the red cell skeleton with theoretical relations to elasticity, connectivity, and spectrin unfolding.

Authors:  J C Lee; D E Discher
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Atomic force microscopy of the erythrocyte membrane skeleton.

Authors:  A H Swihart; J M Mikrut; J B Ketterson; R C Macdonald
Journal:  J Microsc       Date:  2001-12       Impact factor: 1.758

3.  Virus shapes and buckling transitions in spherical shells.

Authors:  Jack Lidmar; Leonid Mirny; David R Nelson
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-11-25

4.  Spectrin-level modeling of the cytoskeleton and optical tweezers stretching of the erythrocyte.

Authors:  J Li; M Dao; C T Lim; S Suresh
Journal:  Biophys J       Date:  2005-03-04       Impact factor: 4.033

5.  Numerical simulation of cell motion in tube flow.

Authors:  C Pozrikidis
Journal:  Ann Biomed Eng       Date:  2005-02       Impact factor: 3.934

6.  Shape transitions of fluid vesicles and red blood cells in capillary flows.

Authors:  Hiroshi Noguchi; Gerhard Gompper
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-26       Impact factor: 11.205

7.  Active elastic network: cytoskeleton of the red blood cell.

Authors:  Nir S Gov
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-01-19

8.  Red blood cell membrane fluctuations and shape controlled by ATP-induced cytoskeletal defects.

Authors:  N S Gov; S A Safran
Journal:  Biophys J       Date:  2004-12-21       Impact factor: 4.033

9.  Cytoskeletal dynamics of human erythrocyte.

Authors:  Ju Li; George Lykotrafitis; Ming Dao; Subra Suresh
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-12       Impact factor: 11.205

Review 10.  Connections between single-cell biomechanics and human disease states: gastrointestinal cancer and malaria.

Authors:  S Suresh; J Spatz; J P Mills; A Micoulet; M Dao; C T Lim; M Beil; T Seufferlein
Journal:  Acta Biomater       Date:  2005-01       Impact factor: 8.947

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  46 in total

1.  A discrete mesoscopic particle model of the mechanics of a multi-constituent arterial wall.

Authors:  Alexandra Witthoft; Alireza Yazdani; Zhangli Peng; Chiara Bellini; Jay D Humphrey; George Em Karniadakis
Journal:  J R Soc Interface       Date:  2016-01       Impact factor: 4.118

2.  Trapped Chromatin Fibers Damage Flowing Red Blood Cells.

Authors:  Maedeh Roushan; Mehdi Jorfi; Avanish Mishra; Keith H K Wong; Julianne Jorgensen; Eric Ell; James F Markmann; Jarone Lee; Daniel Irimia
Journal:  Adv Biosyst       Date:  2018-08-12

3.  Blood flow and cell-free layer in microvessels.

Authors:  Dmitry A Fedosov; Bruce Caswell; Aleksander S Popel; George Em Karniadakis
Journal:  Microcirculation       Date:  2010-11       Impact factor: 2.628

4.  Wall shear stress-based model for adhesive dynamics of red blood cells in malaria.

Authors:  Dmitry A Fedosov; Bruce Caswell; George Em Karniadakis
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

5.  High-Throughput Microfluidic Characterization of Erythrocyte Shapes and Mechanical Variability.

Authors:  Felix Reichel; Johannes Mauer; Ahmad Ahsan Nawaz; Gerhard Gompper; Jochen Guck; Dmitry A Fedosov
Journal:  Biophys J       Date:  2019-05-29       Impact factor: 4.033

6.  Effects of flowing RBCs on adhesion of a circulating tumor cell in microvessels.

Authors:  L L Xiao; Y Liu; S Chen; B M Fu
Journal:  Biomech Model Mechanobiol       Date:  2016-10-13

7.  Stretching and relaxation of malaria-infected red blood cells.

Authors:  Ting Ye; Nhan Phan-Thien; Boo Cheong Khoo; Chwee Teck Lim
Journal:  Biophys J       Date:  2013-09-03       Impact factor: 4.033

8.  Prediction of mechanical hemolysis in medical devices via a Lagrangian strain-based multiscale model.

Authors:  Mehdi Nikfar; Meghdad Razizadeh; Jiafeng Zhang; Ratul Paul; Zhongjun J Wu; Yaling Liu
Journal:  Artif Organs       Date:  2020-03-05       Impact factor: 3.094

9.  Importance of Erythrocyte Deformability for the Alignment of Malaria Parasite upon Invasion.

Authors:  Sebastian Hillringhaus; Anil K Dasanna; Gerhard Gompper; Dmitry A Fedosov
Journal:  Biophys J       Date:  2019-08-29       Impact factor: 4.033

10.  Blood flow in small tubes: quantifying the transition to the non-continuum regime.

Authors:  Huan Lei; Dmitry A Fedosov; Bruce Caswell; George Em Karniadakis
Journal:  J Fluid Mech       Date:  2013-05-01       Impact factor: 3.627

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