Literature DB >> 24328232

Spontaneous prebiotic formation of a β-ribofuranoside that self-assembles with a complementary heterocycle.

Michael C Chen1, Brian J Cafferty, Irena Mamajanov, Isaac Gállego, Jaheda Khanam, Ramanarayanan Krishnamurthy, Nicholas V Hud.   

Abstract

The RNA World hypothesis is central to many current theories regarding the origin and early evolution of life. However, the formation of RNA by plausible prebiotic reactions remains problematic. Formidable challenges include glycosidic bond formation between ribose and the canonical nucleobases, as well as the inability of nucleosides to mutually select their pairing partners from a complex mixture of other molecules prior to polymerization. Here we report a one-pot model prebiotic reaction between a pyrimidine nucleobase (2,4,6-triaminopyrimidine, TAP) and ribose, which produces TAP-ribose conjugates in high yield (60-90%). When cyanuric acid (CA), a plausible ancestral nucleobase, is mixed with a crude TAP+ribose reaction mixture, micrometer-length supramolecular, noncovalent assemblies are formed. A major product of the TAP+ribose reaction is a β-ribofuranoside of TAP, which we term TARC. This nucleoside is also shown to efficiently form supramolecular assemblies in water by pairing and stacking with CA. These results provide a proof-of-concept system demonstrating that several challenges associated with the prebiotic emergence of RNA, or pre-RNA polymers, may not be as problematic as widely believed.

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Year:  2013        PMID: 24328232     DOI: 10.1021/ja410124v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  22 in total

1.  Multimodal Vacuum-Assisted Plasma Ion (VaPI) Source with Transmission Mode and Laser Ablation Sampling Capabilities.

Authors:  Joel D Keelor; Paul B Farnsworth; Arthur L Weber; Heather Abbott-Lyon; Facundo M Fernández
Journal:  J Am Soc Mass Spectrom       Date:  2016-02-16       Impact factor: 3.109

Review 2.  The ribosome challenge to the RNA world.

Authors:  Jessica C Bowman; Nicholas V Hud; Loren Dean Williams
Journal:  J Mol Evol       Date:  2015-03-05       Impact factor: 2.395

3.  Reprogramming the assembly of unmodified DNA with a small molecule.

Authors:  Nicole Avakyan; Andrea A Greschner; Faisal Aldaye; Christopher J Serpell; Violeta Toader; Anne Petitjean; Hanadi F Sleiman
Journal:  Nat Chem       Date:  2016-02-22       Impact factor: 24.427

4.  Hydrolytic Fitness of N-glycosyl Bonds: Comparing the Deglycosylation Kinetics of Modified, Alternative and Native Nucleosides.

Authors:  Andro C Rios; Hiu T Yu; Yitzhak Tor
Journal:  J Phys Org Chem       Date:  2015-03       Impact factor: 2.391

Review 5.  Ancient Evolution and Recent Evolution Converge for the Biodegradation of Cyanuric Acid and Related Triazines.

Authors:  Jennifer L Seffernick; Lawrence P Wackett
Journal:  Appl Environ Microbiol       Date:  2016-01-04       Impact factor: 4.792

6.  Prebiotic chemical refugia: multifaceted scenario for the formation of biomolecules in primitive Earth.

Authors:  Francisco Prosdocimi; Sávio Torres de Farias; Marco V José
Journal:  Theory Biosci       Date:  2022-08-30       Impact factor: 1.315

7.  Citric acid and the RNA world.

Authors:  Ulrich F Müller; Yitzhak Tor
Journal:  Angew Chem Int Ed Engl       Date:  2014-05-19       Impact factor: 15.336

8.  Screening of Minimalist Noncanonical Sites in Duplex DNA and RNA Reveals Context and Motif-Selective Binding by Fluorogenic Base Probes.

Authors:  Yufeng Liang; Shiqin Miao; Jie Mao; Shekaraiah Devari; Maricarmen Gonzalez; Dennis Bong
Journal:  Chemistry       Date:  2021-11-24       Impact factor: 5.236

9.  Exponential self-replication enabled through a fibre elongation/breakage mechanism.

Authors:  Mathieu Colomb-Delsuc; Elio Mattia; Jan W Sadownik; Sijbren Otto
Journal:  Nat Commun       Date:  2015-06-17       Impact factor: 14.919

10.  A ribozyme that triphosphorylates RNA 5'-hydroxyl groups.

Authors:  Janina E Moretti; Ulrich F Müller
Journal:  Nucleic Acids Res       Date:  2014-01-21       Impact factor: 16.971

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