| Literature DB >> 24325193 |
Kosei Tanaka, Shintaro Tajima, Shinji Takenaka, Ken-ichi Yoshida1.
Abstract
BACKGROUND: Bacillus subtilis 168 possesses an efficient pathway to metabolize some of the stereoisomers of inositol, including myo-inositol (MI) and scyllo-inositol (SI). Previously we reported a prototype of a B. subtilis cell factory with modified inositol metabolism that converts MI into SI in the culture medium. However, it wasted half of initial 1.0% (w/v) MI, and the conversion was limited to produce only 0.4% (w/v) SI. To achieve a more efficient SI production, we attempted additional modifications.Entities:
Mesh:
Substances:
Year: 2013 PMID: 24325193 PMCID: PMC3878828 DOI: 10.1186/1475-2859-12-124
Source DB: PubMed Journal: Microb Cell Fact ISSN: 1475-2859 Impact factor: 5.328
Figure 1Inositol metabolism in . B. subtilis iol genes encoding enzymes for reactions in the inositol catabolic pathway and the respective intermediate compounds are shown. The symbols ↑ and Δ indicate over-expressed and deleted genes in KU106, respectively.
MI and SI contained in the culture media after bioconversion
| TM039 | NDb | 0.40 |
| MYI04 | 0.59 | 0.41 |
| KU101 | 0.53 | 0.47 |
| KU102 | 0.56 | 0.44 |
| KU104 | NDb | 0.74 |
| | (NDb,c) | (0.85c) |
| KU105 | 0.13 | 0.80 |
| KU106 | NDb | 1.00 |
aThe medium initially contained 1.0% (w/v) MI. After 48 h of bioconversion, concentrations of MI and SI were determined as described in the text. Values are representative data from 3 independent measurements with similar results.
bND, not detected (<0.001%).
cConcentrations of MI and SI at 24 h of bioconversion.
Figure 2Construction of marker-free deletion mutants and overexpression strains of and . (A) Outline of the method for construction of marker-free deletion mutants. (A-I) Positional relationship between target deletion and regions A, B, and C contained in the PCR fragments used for construction of a marker-free deletion. A: upstream sequence; B: downstream sequence; C: sequence for integration of the mazF cassette. (A-II) Recombinant PCR product using fragments A, B, C, and the mazF cassette. (A-III) Integrant of the mazF cassette at the target region via a double crossover at regions A and C. An intrachromosomal single crossover event between the 2 directly repeated regions B results in elimination of the mazF cassette as well as the target region. (A-IV) Final structure of marker-free deletion. (B) Organization of the iolG and iolW overexpression cassettes. (B-I) For iolG overexpression, PCR fragments covering regions A + B (containing PrpsO or PrpoB) + C + D were ligated by recombinant PCR and integrated into the amyE locus by a double crossover event. (B-II) For iolW overexpression, PCR fragments covering regions E + F + G (PrpsO or PrpoB) + H + I were ligated and integrated into the aprE locus for construction of an iolW-overexpressing strain. (B-III) For simultaneous overexpression of iolG and iolW, a PCR fragment covering regions A + B + C + H + D was ligated and integrated into the amyE locus.
Figure 3Time course of SI production and MI consumption along with cell growth. (A) Bioconversion from MI into SI was performed by strains KU104 (PrpsO-iolW; squares), KU105 (PrpoB-iolW; diamonds), and KU106 (PrpsO-iolG iolW; triangles). Cell growth (optical density of cells: closed symbols) and concentrations of MI (open symbols with dotted lines) and SI (open symbols with continuous lines) in the medium are shown. (B) Bioconversion of MI into SI was performed by strain KU106 (PrpsO-iolG iolW) in the presence of various concentrations of Bacto soytone; 2% (w/v) (triangles), 1% (circles), and 0.5% (squares). Cell growth (optical density of cells: closed symbols) and concentrations of MI (open symbols with dotted lines) and SI (open symbols with continuous lines) in the medium are shown. A representative set of data from three independent experiments with similar results is shown.
Bacterial strains used in this study
| 168 | Laboratory stock | |
| TM039 | [ | |
| MYI04 | Δ | This study |
| KU101 | This study | |
| KU102 | This study | |
| KU104 | This study | |
| KU105 | This study | |
| KU106 | This study |
Oligonucleotide primers used in this study
| iolR-A-F | TGCGCTGCGTAATCAATATC |
| iolR-A-R | GGCTTTGTTGATATTGTACTTATAAAAAACTCCTTCTTGAAT |
| iolR-B-F | ATTCAAGAAGGAGTTTTTTATAAGTACAATATCAACAAAGCC |
| iolR-B-R | GCTTGAGTCAATTCCGCTGTCGTTGAATTCACGCAGCACTTC |
| iolR-C-F | ATTAACGTACTGATTGGGTAGGATCCGCGCTGATGCGGATTCAGGAAAT |
| iolR-C-R | AAGGAGCGGGTTTTTCTCTT |
| iolAF-A-F | GGCCAGATGAATGCCGATTT |
| iolAF-A-R | ACGCCAATACGTAAACTCATTCTTATTGCCTCCTTCATTA |
| iolAF-B-F | TAATGAAGGAGGCAATAAGAATGAGTTTACGTATTGGCGT |
| iolAF-B-R | GCTTGAGTCAATTCCGCTGTCGGCGTGTCGACTACAGCCATA |
| iolAF-C-F | ATTAACGTACTGATTGGGTAGGATCCGCGTCAGGATGTTGAAGGGGAAG |
| iolAF-C-R | AGTTTGCCAAGCGTCACTTT |
| iolHIJ-A-F | CATGAAATTGACGTGCTCCA |
| iolHIJ-A-R | CTCGGCGGTTTCTGGTCTCTTTAGTTTTGAACTGTTGTAA |
| iolHIJ-B-F | TTACAACAGTTCAAAACTAAAGAGACCAGAAACCGCCGAG |
| iolHIJ-B-R | GCTTGAGTCAATTCCGCTGTCGAAACGCAGTTCAAACCGTTC |
| iolHIJ-C-F | ATTAACGTACTGATTGGGTAGGATCCGCGCGCACTCGTTTTCTTCAACA |
| iolHIJ-C-R | AATGGCTTCCTCAGCAGTC |
| iolX-A-F | GCTCCGACTGCTATTTTTGC |
| iolX-A-R | TAAGCGCGCTTCACATCTAGCAATACTGCACATCTTACTT |
| iolX-B-F | AAGTAAGATGTGCAGTATTGCTAGATGTGAAGCGCGCTTA |
| iolX-B-R | GCTTGAGTCAATTCCGCTGTCGCGGAGGAAACTGCCTATCAA |
| iolX-C-F | ATTAACGTACTGATTGGGTAGGATCCGCGGCCTTGAGGAATCAAAAGCA |
| iolX-C-R | TCCGTATGGAGAGGTTCTGC |
| amyE-1-F | CCTTCCAGGGTATGTTTCTC |
| amyE-1-R | CAAACGAAAATTGGATAAAGTGGG |
| PrpsO-iolG-F | CCCACTTTATCCAATTTTCGTTTGATGGCATCAAAGAATTAACTGAGC |
| PrpsO-iolG-R | CCTTTCTTTACTTGGCTCTGAGGCCAAATCATATTTAGCCCCAGTTACC |
| PrpoB-iolG-F | CCCACTTTATCCAATTTTCGTTTGGCGCGCCTTCTGCCATTG |
| PrpoB-iolG-R | CCTTTCTTTACTTGGCTCTGAGGGCGTATTATATGTGTAATAAGCATTTC |
| iolG-F | CCTCAGAGCCAAGTAAAGAAAGG |
| iolG-R2 | CACAAATTAAAAACTGGTCTGATCGCCTCTGTTTTTTAGTTTTGAACTGTTG |
| amyE-2-F | CGATCAGACCAGTTTTTAATTTGTG |
| amyE-2-R | TTAACAAAATTCTCCAGTCTTCACATCG |
| aprE-1-F | CAATCTTTACGCTTTGCGTTCTCG |
| aprE-1-R | GTTACACGTTACTAAAGGGAATGTAGCGGAGCAGCAGCGTTAATTC |
| Em-F | CTACATTCCCTTTAGTAACGTGTAAC |
| Em-R | GAGTGTGTTGATAGTGCAGTATC |
| PrpsO-iolW-F | GATACTGCACTATCAACACACTCATGGCATCAAAGAATTAACTGAGC |
| PrpsO-iolW-R | GTATATACCCTCCTGATCAAATGGCCAAATCATATTTAGCCCCAGTTACC |
| PrpoB-iolW-F | GATACTGCACTATCAACACACTCGCGCGCCTTCTGCCATTG |
| PrpoB-iolW-R | GTATATACCCTCCTGATCAAATGGGCGTATTATATGTGTAATAAGCATTTC |
| iolW-F | CCATTTGATCAGGAGGGTATATAC |
| iolW-R | GATTGCGCGTGCGAAAGAAG |
| aprE-2-F | CTTCTTTCGCACGCGCAATCCGCAAACAACAAGCTGATCCAC |
| aprE-2-R | GACATTCGGCACACTCCTTTTC |
| iolG-R | CCTCTGTTTTTTAGTTTTGAACTGTTG |
| iolW-F-Tail | CAACAGTTCAAAACTAAAAAACAGAGGCCATTTGATCAGGAGGGTATATAC |
| iolW-R-Tail | CGATGTGAAGACTGGAGAATTTTGTTAAGATTGCGCGTGCGAAAGAAG |
| mazFK7-F | CGACAGCGGAATTGACTCAAGC |
| mazFK7-R | CGCGGATCCTACCCAATCAG |