Literature DB >> 24319989

A systematic approach to obtain validated partial least square models for predicting lipoprotein subclasses from serum NMR spectra.

Velitchka V Mihaleva1, Daniël B van Schalkwijk, Albert A de Graaf, John van Duynhoven, Ferdinand A van Dorsten, Jacques Vervoort, Age Smilde, Johan A Westerhuis, Doris M Jacobs.   

Abstract

A systematic approach is described for building validated PLS models that predict cholesterol and triglyceride concentrations in lipoprotein subclasses in fasting serum from a normolipidemic, healthy population. The PLS models were built on diffusion-edited (1)H NMR spectra and calibrated on HPLC-derived lipoprotein subclasses. The PLS models were validated using an independent test set. In addition to total VLDL, LDL, and HDL lipoproteins, statistically significant PLS models were obtained for 13 subclasses, including 5 VLDLs (particle size 64-31.3 nm), 4 LDLs (particle size 28.6-20.7 nm) and 4 HDLs (particle size 13.5-9.8 nm). The best models were obtained for triglycerides in VLDL (0.82 < Q(2) <0.92) and HDL (0.69 < Q(2) <0.79) subclasses and for cholesterol in HDL subclasses (0.68 < Q(2) <0.96). Larger variations in the model performance were observed for triglycerides in LDL subclasses and cholesterol in VLDL and LDL subclasses. The potential of the NMR-PLS model was assessed by comparing the LPD of 52 subjects before and after a 4-week treatment with dietary supplements that were hypothesized to change blood lipids. The supplements induced significant (p < 0.001) changes on multiple subclasses, all of which clearly exceeded the prediction errors.

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Year:  2013        PMID: 24319989     DOI: 10.1021/ac402571z

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  14 in total

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Journal:  PLoS One       Date:  2015-08-28       Impact factor: 3.240

2.  An NMR-based metabolomic approach to investigate the effects of supplementation with glutamic acid in piglets challenged with deoxynivalenol.

Authors:  Miaomiao Wu; Hao Xiao; Wenkai Ren; Jie Yin; Jiayu Hu; Jielin Duan; Gang Liu; Bie Tan; Xia Xiong; Abimbola Oladele Oso; Olayiwola Adeola; Kang Yao; Yulong Yin; Tiejun Li
Journal:  PLoS One       Date:  2014-12-11       Impact factor: 3.240

3.  Metabolic profiling-multitude of technologies with great research potential, but (when) will translation emerge?

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Journal:  Int J Epidemiol       Date:  2016-10-27       Impact factor: 7.196

4.  Toward Reliable Lipoprotein Particle Predictions from NMR Spectra of Human Blood: An Interlaboratory Ring Test.

Authors:  Sandra Monsonis Centelles; Huub C J Hoefsloot; Bekzod Khakimov; Parvaneh Ebrahimi; Mads V Lind; Mette Kristensen; Niels de Roo; Doris M Jacobs; John van Duynhoven; Claire Cannet; Fang Fang; Eberhard Humpfer; Hartmut Schäfer; Manfred Spraul; Søren B Engelsen; Age K Smilde
Journal:  Anal Chem       Date:  2017-07-20       Impact factor: 6.986

5.  Active Smarter Kids (ASK): Rationale and design of a cluster-randomized controlled trial investigating the effects of daily physical activity on children's academic performance and risk factors for non-communicable diseases.

Authors:  Geir K Resaland; Vegard Fusche Moe; Eivind Aadland; Jostein Steene-Johannessen; Øyvind Glosvik; John R Andersen; Olav M Kvalheim; Heather A McKay; Sigmund A Anderssen
Journal:  BMC Public Health       Date:  2015-07-28       Impact factor: 3.295

6.  Metabolic markers in blood can separate prostate cancer from benign prostatic hyperplasia.

Authors:  Guro F Giskeødegård; Ailin Falkmo Hansen; Helena Bertilsson; Susana Villa Gonzalez; Kåre Andre Kristiansen; Per Bruheim; Svein A Mjøs; Anders Angelsen; Tone Frost Bathen; May-Britt Tessem
Journal:  Br J Cancer       Date:  2015-12-03       Impact factor: 7.640

7.  Lipoprotein subfractions by nuclear magnetic resonance are associated with tumor characteristics in breast cancer.

Authors:  Vidar G Flote; Riyas Vettukattil; Tone F Bathen; Thore Egeland; Anne McTiernan; Hanne Frydenberg; Anders Husøy; Sissi E Finstad; Jon Lømo; Øystein Garred; Ellen Schlichting; Erik A Wist; Inger Thune
Journal:  Lipids Health Dis       Date:  2016-03-12       Impact factor: 3.876

8.  Predictive associations between serum fatty acids and lipoproteins in healthy non-obese Norwegians: implications for cardiovascular health.

Authors:  Chenchen Lin; Tarja Rajalahti; Svein Are Mjøs; Olav Martin Kvalheim
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9.  Effect of Theobromine Consumption on Serum Lipoprotein Profiles in Apparently Healthy Humans with Low HDL-Cholesterol Concentrations.

Authors:  Doris M Jacobs; Lotte Smolders; Yuguang Lin; Niels de Roo; Elke A Trautwein; John van Duynhoven; Ronald P Mensink; Jogchum Plat; Velitchka V Mihaleva
Journal:  Front Mol Biosci       Date:  2017-08-24

Review 10.  Quantitative Serum Nuclear Magnetic Resonance Metabolomics in Large-Scale Epidemiology: A Primer on -Omic Technologies.

Authors:  Peter Würtz; Antti J Kangas; Pasi Soininen; Debbie A Lawlor; George Davey Smith; Mika Ala-Korpela
Journal:  Am J Epidemiol       Date:  2017-11-01       Impact factor: 4.897

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