Literature DB >> 24316221

Conserved RNA helicase FRH acts nonenzymatically to support the intrinsically disordered neurospora clock protein FRQ.

Jennifer M Hurley1, Luis F Larrondo2, Jennifer J Loros3, Jay C Dunlap4.   

Abstract

Protein conformation dictates a great deal of protein function. A class of naturally unstructured proteins, termed intrinsically disordered proteins (IDPs), demonstrates that flexibility in structure can be as important mechanistically as rigid structure. At the core of the circadian transcription/translation feedback loop in Neurospora crassa is the protein FREQUENCY (FRQ), shown here shown to share many characteristics of IDPs. FRQ in turn binds to FREQUENCY-Interacting RNA Helicase (FRH), whose clock function has been assumed to relate to its predicted helicase function. However, mutational analyses reveal that the helicase function of FRH is not essential for the clock, and a region of FRH distinct from the helicase region is essential for stabilizing FRQ against rapid degradation via a pathway distinct from its typical ubiquitin-mediated turnover. These data lead to the hypothesis that FRQ is an IDP and that FRH acts nonenzymatically, stabilizing FRQ to enable proper clock circuitry/function.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 24316221      PMCID: PMC3900029          DOI: 10.1016/j.molcel.2013.11.005

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  65 in total

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Journal:  Curr Opin Struct Biol       Date:  2011-04-20       Impact factor: 6.809

Review 2.  The DEAD-box protein family of RNA helicases.

Authors:  Olivier Cordin; Josette Banroques; N Kyle Tanner; Patrick Linder
Journal:  Gene       Date:  2005-12-07       Impact factor: 3.688

3.  Phosphorylation modulates rapid nucleocytoplasmic shuttling and cytoplasmic accumulation of Neurospora clock protein FRQ on a circadian time scale.

Authors:  Axel C R Diernfellner; Christina Querfurth; Carlos Salazar; Thomas Höfer; Michael Brunner
Journal:  Genes Dev       Date:  2009-09-15       Impact factor: 11.361

4.  Functional significance of FRH in regulating the phosphorylation and stability of Neurospora circadian clock protein FRQ.

Authors:  Jinhu Guo; Ping Cheng; Yi Liu
Journal:  J Biol Chem       Date:  2010-02-16       Impact factor: 5.157

5.  CKI and CKII mediate the FREQUENCY-dependent phosphorylation of the WHITE COLLAR complex to close the Neurospora circadian negative feedback loop.

Authors:  Qun He; Joonseok Cha; Qiyang He; Heng-Chi Lee; Yuhong Yang; Yi Liu
Journal:  Genes Dev       Date:  2006-09-15       Impact factor: 11.361

6.  The relationship between FRQ-protein stability and temperature compensation in the Neurospora circadian clock.

Authors:  Peter Ruoff; Jennifer J Loros; Jay C Dunlap
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-28       Impact factor: 11.205

7.  Fully codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock.

Authors:  Van D Gooch; Arun Mehra; Luis F Larrondo; Julie Fox; Melissa Touroutoutoudis; Jennifer J Loros; Jay C Dunlap
Journal:  Eukaryot Cell       Date:  2007-08-31

8.  Large-scale analysis of thermostable, mammalian proteins provides insights into the intrinsically disordered proteome.

Authors:  Charles A Galea; Anthony A High; John C Obenauer; Ashutosh Mishra; Cheon-Gil Park; Marco Punta; Avner Schlessinger; Jing Ma; Burkhard Rost; Clive A Slaughter; Richard W Kriwacki
Journal:  J Proteome Res       Date:  2009-01       Impact factor: 4.466

9.  The exosome regulates circadian gene expression in a posttranscriptional negative feedback loop.

Authors:  Jinhu Guo; Ping Cheng; Haiyan Yuan; Yi Liu
Journal:  Cell       Date:  2009-09-10       Impact factor: 41.582

10.  Binary classification of protein molecules into intrinsically disordered and ordered segments.

Authors:  Satoshi Fukuchi; Kazuo Hosoda; Keiichi Homma; Takashi Gojobori; Ken Nishikawa
Journal:  BMC Struct Biol       Date:  2011-06-22
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  34 in total

Review 1.  Dissecting the mechanisms of the clock in Neurospora.

Authors:  Jennifer Hurley; Jennifer J Loros; Jay C Dunlap
Journal:  Methods Enzymol       Date:  2014-12-26       Impact factor: 1.600

2.  Experimental and Mathematical Analyses Relating Circadian Period and Phase of Entrainment in Neurospora crassa.

Authors:  Kwangwon Lee; Prithvi Shiva Kumar; Sean McQuade; Joshua Y Lee; Sohyun Park; Zheming An; Benedetto Piccoli
Journal:  J Biol Rhythms       Date:  2017-11-28       Impact factor: 3.182

3.  Nonoptimal codon usage influences protein structure in intrinsically disordered regions.

Authors:  Mian Zhou; Tao Wang; Jingjing Fu; Guanghua Xiao; Yi Liu
Journal:  Mol Microbiol       Date:  2015-06-25       Impact factor: 3.501

4.  Circadian rhythms. Decoupling circadian clock protein turnover from circadian period determination.

Authors:  Luis F Larrondo; Consuelo Olivares-Yañez; Christopher L Baker; Jennifer J Loros; Jay C Dunlap
Journal:  Science       Date:  2015-01-30       Impact factor: 47.728

Review 5.  Circadian Oscillators: Around the Transcription-Translation Feedback Loop and on to Output.

Authors:  Jennifer M Hurley; Jennifer J Loros; Jay C Dunlap
Journal:  Trends Biochem Sci       Date:  2016-08-03       Impact factor: 13.807

6.  A large nonconserved region of the tethering protein Leashin is involved in regulating the position, movement, and function of Woronin bodies in Aspergillus oryzae.

Authors:  Pei Han; Feng Jie Jin; Jun-Ichi Maruyama; Katsuhiko Kitamoto
Journal:  Eukaryot Cell       Date:  2014-05-09

7.  Structure of the frequency-interacting RNA helicase: a protein interaction hub for the circadian clock.

Authors:  Karen S Conrad; Jennifer M Hurley; Joanne Widom; Carol S Ringelberg; Jennifer J Loros; Jay C Dunlap; Brian R Crane
Journal:  EMBO J       Date:  2016-06-23       Impact factor: 11.598

8.  Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways.

Authors:  Jennifer M Hurley; Meaghan S Jankowski; Hannah De Los Santos; Alexander M Crowell; Samuel B Fordyce; Jeremy D Zucker; Neeraj Kumar; Samuel O Purvine; Errol W Robinson; Anil Shukla; Erika Zink; William R Cannon; Scott E Baker; Jennifer J Loros; Jay C Dunlap
Journal:  Cell Syst       Date:  2018-12-12       Impact factor: 10.304

9.  Phosphorylation-induced conformational dynamics in an intrinsically disordered protein and potential role in phenotypic heterogeneity.

Authors:  Prakash Kulkarni; Mohit Kumar Jolly; Dongya Jia; Steven M Mooney; Ajay Bhargava; Luciane T Kagohara; Yihong Chen; Pengyu Hao; Yanan He; Robert W Veltri; Alexander Grishaev; Keith Weninger; Herbert Levine; John Orban
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-13       Impact factor: 11.205

Review 10.  Making Time: Conservation of Biological Clocks from Fungi to Animals.

Authors:  Jay C Dunlap; Jennifer J Loros
Journal:  Microbiol Spectr       Date:  2017-05
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