Literature DB >> 17766461

Fully codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock.

Van D Gooch1, Arun Mehra, Luis F Larrondo, Julie Fox, Melissa Touroutoutoudis, Jennifer J Loros, Jay C Dunlap.   

Abstract

We report the complete reconstruction of the firefly luciferase gene, fully codon optimized for expression in Neurospora crassa. This reporter enhances light output by approximately 4 log orders over that with previously available versions, now producing light that is visible to the naked eye and sufficient for monitoring the activities of many poorly expressed genes. Time lapse photography of strains growing in race tubes, in which the frq or eas/ccg-2 promoter is used to drive luciferase, shows the highest levels of luciferase activity near the growth front and newly formed conidial bands. Further, we have established a sorbose medium colony assay that will facilitate luciferase-based screens. The signals from sorbose-grown colonies of strains in which the frq promoter drives luciferase exhibit the properties of circadian rhythms and can be tracked for many days to weeks. This reporter now makes it possible to follow the clock in real time, even in strains or under conditions in which the circadian rhythm in conidial banding is not expressed. This property has been used to discover short, ca. 15-h period rhythms at high temperatures, at which banding becomes difficult to observe in race tubes, and to generate a high-resolution temperature phase-response curve.

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Year:  2007        PMID: 17766461      PMCID: PMC2224151          DOI: 10.1128/EC.00257-07

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN: 1535-9786


  37 in total

1.  Codon usage tabulated from international DNA sequence databases: status for the year 2000.

Authors:  Y Nakamura; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY.

Authors:  Allan C Froehlich; Jennifer J Loros; Jay C Dunlap
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-24       Impact factor: 11.205

3.  Temperature-modulated alternative splicing and promoter use in the Circadian clock gene frequency.

Authors:  Hildur V Colot; Jennifer J Loros; Jay C Dunlap
Journal:  Mol Biol Cell       Date:  2005-09-29       Impact factor: 4.138

4.  Temperature Compensation of Circadian Period Length in Clock Mutants of Neurospora crassa.

Authors:  G F Gardner; J F Feldman
Journal:  Plant Physiol       Date:  1981-12       Impact factor: 8.340

Review 5.  How fungi keep time: circadian system in Neurospora and other fungi.

Authors:  Jay C Dunlap; Jennifer J Loros
Journal:  Curr Opin Microbiol       Date:  2006-10-24       Impact factor: 7.934

6.  Circadian nature of a rhythm expressed by an invertaseless strain of Neurospora crassa.

Authors:  M L Sargent; W R Briggs; D O Woodward
Journal:  Plant Physiol       Date:  1966-10       Impact factor: 8.340

7.  Temperature effects on the resetting of the phase of the Neurospora circadian rhythm.

Authors:  V D Gooch; R A Wehseler; C G Gross
Journal:  J Biol Rhythms       Date:  1994       Impact factor: 3.182

8.  Novel features of drosophila period Transcription revealed by real-time luciferase reporting.

Authors:  C Brandes; J D Plautz; R Stanewsky; C F Jamison; M Straume; K V Wood; S A Kay; J C Hall
Journal:  Neuron       Date:  1996-04       Impact factor: 17.173

9.  Feedback repression is required for mammalian circadian clock function.

Authors:  Trey K Sato; Rikuhiro G Yamada; Hideki Ukai; Julie E Baggs; Loren J Miraglia; Tetsuya J Kobayashi; David K Welsh; Steve A Kay; Hiroki R Ueda; John B Hogenesch
Journal:  Nat Genet       Date:  2006-02-12       Impact factor: 38.330

10.  Forward genetic analysis of the circadian clock separates the multiple functions of ZEITLUPE.

Authors:  Eva Kevei; Péter Gyula; Anthony Hall; László Kozma-Bognár; Woe-Yeon Kim; Maria E Eriksson; Réka Tóth; Shigeru Hanano; Balázs Fehér; Megan M Southern; Ruth M Bastow; András Viczián; Victoria Hibberd; Seth J Davis; David E Somers; Ferenc Nagy; Andrew J Millar
Journal:  Plant Physiol       Date:  2006-01-20       Impact factor: 8.340

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  74 in total

1.  Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential.

Authors:  Jennifer M Hurley; Arko Dasgupta; Jillian M Emerson; Xiaoying Zhou; Carol S Ringelberg; Nicole Knabe; Anna M Lipzen; Erika A Lindquist; Christopher G Daum; Kerrie W Barry; Igor V Grigoriev; Kristina M Smith; James E Galagan; Deborah Bell-Pedersen; Michael Freitag; Chao Cheng; Jennifer J Loros; Jay C Dunlap
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-31       Impact factor: 11.205

2.  Validation of a self-excising marker in the human pathogen Aspergillus fumigatus by employing the beta-rec/six site-specific recombination system.

Authors:  Thomas Hartmann; Michaela Dümig; Basem M Jaber; Edyta Szewczyk; Patrick Olbermann; Joachim Morschhäuser; Sven Krappmann
Journal:  Appl Environ Microbiol       Date:  2010-07-23       Impact factor: 4.792

Review 3.  Dissecting the mechanisms of the clock in Neurospora.

Authors:  Jennifer Hurley; Jennifer J Loros; Jay C Dunlap
Journal:  Methods Enzymol       Date:  2014-12-26       Impact factor: 1.600

4.  Methods to study molecular mechanisms of the Neurospora circadian clock.

Authors:  Joonseok Cha; Mian Zhou; Yi Liu
Journal:  Methods Enzymol       Date:  2014-12-26       Impact factor: 1.600

5.  CATP is a critical component of the Neurospora circadian clock by regulating the nucleosome occupancy rhythm at the frequency locus.

Authors:  Joonseok Cha; Mian Zhou; Yi Liu
Journal:  EMBO Rep       Date:  2013-08-20       Impact factor: 8.807

6.  Suppression of WC-independent frequency transcription by RCO-1 is essential for Neurospora circadian clock.

Authors:  Zhipeng Zhou; Xiao Liu; Qiwen Hu; Ning Zhang; Guangyan Sun; Joonseok Cha; Ying Wang; Yi Liu; Qun He
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-25       Impact factor: 11.205

7.  Application of the Saccharomyces cerevisiae FLP/FRT recombination system in filamentous fungi for marker recycling and construction of knockout strains devoid of heterologous genes.

Authors:  Katarina Kopke; Birgit Hoff; Ulrich Kück
Journal:  Appl Environ Microbiol       Date:  2010-05-14       Impact factor: 4.792

8.  Assessment of efficacy of antifungals against Aspergillus fumigatus: value of real-time bioluminescence imaging.

Authors:  Célimène Galiger; Matthias Brock; Grégory Jouvion; Amélie Savers; Marianna Parlato; Oumaïma Ibrahim-Granet
Journal:  Antimicrob Agents Chemother       Date:  2013-04-15       Impact factor: 5.191

9.  Circadian rhythms in Neurospora crassa: dynamics of the clock component frequency visualized using a fluorescent reporter.

Authors:  Ernestina Castro-Longoria; Michael Ferry; Salomón Bartnicki-Garcia; Jeff Hasty; Stuart Brody
Journal:  Fungal Genet Biol       Date:  2010-01-04       Impact factor: 3.495

10.  Bioluminescent Aspergillus fumigatus, a new tool for drug efficiency testing and in vivo monitoring of invasive aspergillosis.

Authors:  Matthias Brock; Grégory Jouvion; Sabrina Droin-Bergère; Olivier Dussurget; Marie-Anne Nicola; Oumaïma Ibrahim-Granet
Journal:  Appl Environ Microbiol       Date:  2008-09-26       Impact factor: 4.792

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