Literature DB >> 24315604

Object-oriented Bayesian networks for evaluating DIP-STR profiling results from unbalanced DNA mixtures.

G Cereda1, A Biedermann, D Hall, F Taroni.   

Abstract

The genetic characterization of unbalanced mixed stains remains an important area where improvement is imperative. In fact, with current methods for DNA analysis (Polymerase Chain Reaction with the SGM Plus multiplex kit), it is generally not possible to obtain a conventional autosomal DNA profile of the minor contributor if the ratio between the two contributors in a mixture is smaller than 1:10. This is a consequence of the fact that the major contributor's profile 'masks' that of the minor contributor. Besides known remedies to this problem, such as Y-STR analysis, a new compound genetic marker that consists of a Deletion/Insertion Polymorphism (DIP), linked to a Short Tandem Repeat (STR) polymorphism, has recently been developed and proposed elsewhere in literature. The present paper reports on the derivation of an approach for the probabilistic evaluation of DIP-STR profiling results obtained from unbalanced DNA mixtures. The procedure is based on object-oriented Bayesian networks (OOBNs) and uses the likelihood ratio as an expression of the probative value. OOBNs are retained in this paper because they allow one to provide a clear description of the genotypic configuration observed for the mixed stain as well as for the various potential contributors (e.g., victim and suspect). These models also allow one to depict the assumed relevance relationships and perform the necessary probabilistic computations.
Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

Entities:  

Keywords:  Bayesian networks; Deletion/Insertion Polymorphism; Likelihood ratio; Object-orientation; Unbalanced DNA mixture

Mesh:

Substances:

Year:  2013        PMID: 24315604     DOI: 10.1016/j.fsigen.2013.09.001

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  3 in total

Review 1.  Separation/extraction, detection, and interpretation of DNA mixtures in forensic science (review).

Authors:  Ruiyang Tao; Shouyu Wang; Jiashuo Zhang; Jingyi Zhang; Zihao Yang; Xiang Sheng; Yiping Hou; Suhua Zhang; Chengtao Li
Journal:  Int J Legal Med       Date:  2018-05-25       Impact factor: 2.686

2.  Inferring biogeographic ancestry with compound markers of slow and fast evolving polymorphisms.

Authors:  Amandine Moriot; Carla Santos; Ana Freire-Aradas; Christopher Phillips; Diana Hall
Journal:  Eur J Hum Genet       Date:  2018-07-11       Impact factor: 4.246

3.  A novel multiplex assay of SNP-STR markers for forensic purpose.

Authors:  Tian Wei; Fei Liao; Yaowu Wang; Chao Pan; Chao Xiao; Daixin Huang
Journal:  PLoS One       Date:  2018-07-18       Impact factor: 3.240

  3 in total

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