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Literature DB >> 24314550

Estimation of SNP heritability from dense genotype data.

S Hong Lee¹, Jian Yang, Guo-Bo Chen, Stephan Ripke, Eli A Stahl, Christina M Hultman, Pamela Sklar, Peter M Visscher, Patrick F Sullivan, Michael E Goddard, Naomi R Wray.

Abstract

Mesh：

Year: 2013 PMID： 24314550 PMCID： PMC3852919 DOI： 10.1016/j.ajhg.2013.10.015

Source DB: PubMed Journal: Am J Hum Genet ISSN： 0002-9297 Impact factor: 11.025

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15 in total

1. Estimation of the inbreeding coefficient through use of genomic data.

Authors: Anne-Louise Leutenegger; Bernard Prum; Emmanuelle Génin; Christophe Verny; Arnaud Lemainque; Françoise Clerget-Darpoux; Elizabeth A Thompson
Journal: Am J Hum Genet Date: 2003-07-29 Impact factor: 11.025

2. GCTA: a tool for genome-wide complex trait analysis.

Authors: Jian Yang; S Hong Lee; Michael E Goddard; Peter M Visscher
Journal: Am J Hum Genet Date: 2010-12-17 Impact factor: 11.025

3. Efficient methods to compute genomic predictions.

Authors: P M VanRaden
Journal: J Dairy Sci Date: 2008-11 Impact factor: 4.034

4. Common SNPs explain a large proportion of the heritability for human height.

Authors: Jian Yang; Beben Benyamin; Brian P McEvoy; Scott Gordon; Anjali K Henders; Dale R Nyholt; Pamela A Madden; Andrew C Heath; Nicholas G Martin; Grant W Montgomery; Michael E Goddard; Peter M Visscher
Journal: Nat Genet Date: 2010-06-20 Impact factor: 38.330

5. Genetic architecture of complex traits and accuracy of genomic prediction: coat colour, milk-fat percentage, and type in Holstein cattle as contrasting model traits.

Authors: Ben J Hayes; Jennie Pryce; Amanda J Chamberlain; Phil J Bowman; Mike E Goddard
Journal: PLoS Genet Date: 2010-09-23 Impact factor: 5.917

6. Bayesian inference analyses of the polygenic architecture of rheumatoid arthritis.

Authors: Eli A Stahl; Daniel Wegmann; Gosia Trynka; Javier Gutierrez-Achury; Ron Do; Benjamin F Voight; Peter Kraft; Robert Chen; Henrik J Kallberg; Fina A S Kurreeman; Sekar Kathiresan; Cisca Wijmenga; Peter K Gregersen; Lars Alfredsson; Katherine A Siminovitch; Jane Worthington; Paul I W de Bakker; Soumya Raychaudhuri; Robert M Plenge
Journal: Nat Genet Date: 2012-03-25 Impact factor: 38.330

7. Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs.

Authors: S Hong Lee; Teresa R DeCandia; Stephan Ripke; Jian Yang; Patrick F Sullivan; Michael E Goddard; Matthew C Keller; Peter M Visscher; Naomi R Wray
Journal: Nat Genet Date: 2012-02-19 Impact factor: 38.330

8. An efficient variance component approach implementing an average information REML suitable for combined LD and linkage mapping with a general complex pedigree.

Authors: Sang Hong Lee; Julius H J van der Werf
Journal: Genet Sel Evol Date: 2006 Jan-Feb Impact factor: 4.297

9. A genomic background based method for association analysis in related individuals.

Authors: Najaf Amin; Cornelia M van Duijn; Yurii S Aulchenko
Journal: PLoS One Date: 2007-12-05 Impact factor: 3.240

10. Genome-wide association analysis identifies 13 new risk loci for schizophrenia.

Authors: Stephan Ripke; Colm O'Dushlaine; Kimberly Chambert; Jennifer L Moran; Anna K Kähler; Susanne Akterin; Sarah E Bergen; Ann L Collins; James J Crowley; Menachem Fromer; Yunjung Kim; Sang Hong Lee; Patrik K E Magnusson; Nick Sanchez; Eli A Stahl; Stephanie Williams; Naomi R Wray; Kai Xia; Francesco Bettella; Anders D Borglum; Brendan K Bulik-Sullivan; Paul Cormican; Nick Craddock; Christiaan de Leeuw; Naser Durmishi; Michael Gill; Vera Golimbet; Marian L Hamshere; Peter Holmans; David M Hougaard; Kenneth S Kendler; Kuang Lin; Derek W Morris; Ole Mors; Preben B Mortensen; Benjamin M Neale; Francis A O'Neill; Michael J Owen; Milica Pejovic Milovancevic; Danielle Posthuma; John Powell; Alexander L Richards; Brien P Riley; Douglas Ruderfer; Dan Rujescu; Engilbert Sigurdsson; Teimuraz Silagadze; August B Smit; Hreinn Stefansson; Stacy Steinberg; Jaana Suvisaari; Sarah Tosato; Matthijs Verhage; James T Walters; Douglas F Levinson; Pablo V Gejman; Kenneth S Kendler; Claudine Laurent; Bryan J Mowry; Michael C O'Donovan; Michael J Owen; Ann E Pulver; Brien P Riley; Sibylle G Schwab; Dieter B Wildenauer; Frank Dudbridge; Peter Holmans; Jianxin Shi; Margot Albus; Madeline Alexander; Dominique Campion; David Cohen; Dimitris Dikeos; Jubao Duan; Peter Eichhammer; Stephanie Godard; Mark Hansen; F Bernard Lerer; Kung-Yee Liang; Wolfgang Maier; Jacques Mallet; Deborah A Nertney; Gerald Nestadt; Nadine Norton; Francis A O'Neill; George N Papadimitriou; Robert Ribble; Alan R Sanders; Jeremy M Silverman; Dermot Walsh; Nigel M Williams; Brandon Wormley; Maria J Arranz; Steven Bakker; Stephan Bender; Elvira Bramon; David Collier; Benedicto Crespo-Facorro; Jeremy Hall; Conrad Iyegbe; Assen Jablensky; Rene S Kahn; Luba Kalaydjieva; Stephen Lawrie; Cathryn M Lewis; Kuang Lin; Don H Linszen; Ignacio Mata; Andrew McIntosh; Robin M Murray; Roel A Ophoff; John Powell; Dan Rujescu; Jim Van Os; Muriel Walshe; Matthias Weisbrod; Durk Wiersma; Peter Donnelly; Ines Barroso; Jenefer M Blackwell; Elvira Bramon; Matthew A Brown; Juan P Casas; Aiden P Corvin; Panos Deloukas; Audrey Duncanson; Janusz Jankowski; Hugh S Markus; Christopher G Mathew; Colin N A Palmer; Robert Plomin; Anna Rautanen; Stephen J Sawcer; Richard C Trembath; Ananth C Viswanathan; Nicholas W Wood; Chris C A Spencer; Gavin Band; Céline Bellenguez; Colin Freeman; Garrett Hellenthal; Eleni Giannoulatou; Matti Pirinen; Richard D Pearson; Amy Strange; Zhan Su; Damjan Vukcevic; Peter Donnelly; Cordelia Langford; Sarah E Hunt; Sarah Edkins; Rhian Gwilliam; Hannah Blackburn; Suzannah J Bumpstead; Serge Dronov; Matthew Gillman; Emma Gray; Naomi Hammond; Alagurevathi Jayakumar; Owen T McCann; Jennifer Liddle; Simon C Potter; Radhi Ravindrarajah; Michelle Ricketts; Avazeh Tashakkori-Ghanbaria; Matthew J Waller; Paul Weston; Sara Widaa; Pamela Whittaker; Ines Barroso; Panos Deloukas; Christopher G Mathew; Jenefer M Blackwell; Matthew A Brown; Aiden P Corvin; Mark I McCarthy; Chris C A Spencer; Elvira Bramon; Aiden P Corvin; Michael C O'Donovan; Kari Stefansson; Edward Scolnick; Shaun Purcell; Steven A McCarroll; Pamela Sklar; Christina M Hultman; Patrick F Sullivan
Journal: Nat Genet Date: 2013-08-25 Impact factor: 38.330

55 in total

1. Partitioning heritability of regulatory and cell-type-specific variants across 11 common diseases.

Authors: Alexander Gusev; S Hong Lee; Gosia Trynka; Hilary Finucane; Bjarni J Vilhjálmsson; Han Xu; Chongzhi Zang; Stephan Ripke; Brendan Bulik-Sullivan; Eli Stahl; Anna K Kähler; Christina M Hultman; Shaun M Purcell; Steven A McCarroll; Mark Daly; Bogdan Pasaniuc; Patrick F Sullivan; Benjamin M Neale; Naomi R Wray; Soumya Raychaudhuri; Alkes L Price
Journal: Am J Hum Genet Date: 2014-11-06 Impact factor: 11.025

2. Dominance genetic variation contributes little to the missing heritability for human complex traits.

Authors: Zhihong Zhu; Andrew Bakshi; Anna A E Vinkhuyzen; Gibran Hemani; Sang Hong Lee; Ilja M Nolte; Jana V van Vliet-Ostaptchouk; Harold Snieder; Tonu Esko; Lili Milani; Reedik Mägi; Andres Metspalu; William G Hill; Bruce S Weir; Michael E Goddard; Peter M Visscher; Jian Yang
Journal: Am J Hum Genet Date: 2015-02-12 Impact factor: 11.025

3. Age- and gender-dependent heterogeneous proportion of variation explained by SNPs in quantitative traits reflecting human health.

Authors: Dain Lee; Chaeyoung Lee
Journal: Age (Dordr) Date: 2015-02-21

4. Generalized meta-analysis for multiple regression models across studies with disparate covariate information.

Authors: Prosenjit Kundu; Runlong Tang; Nilanjan Chatterjee
Journal: Biometrika Date: 2019-07-13 Impact factor: 2.445

5. Heritability of Recurrent Exertional Rhabdomyolysis in Standardbred and Thoroughbred Racehorses Derived From SNP Genotyping Data.

Authors: Elaine M Norton; James R Mickelson; Matthew M Binns; Sarah C Blott; Paul Caputo; Cajsa M Isgren; Annette M McCoy; Alison Moore; Richard J Piercy; June E Swinburne; Mark Vaudin; Molly E McCue
Journal: J Hered Date: 2016-08-03 Impact factor: 2.645

6. Concepts, estimation and interpretation of SNP-based heritability.

Authors: Jian Yang; Jian Zeng; Michael E Goddard; Naomi R Wray; Peter M Visscher
Journal: Nat Genet Date: 2017-08-30 Impact factor: 38.330

7. Estimation of Genetic Correlation via Linkage Disequilibrium Score Regression and Genomic Restricted Maximum Likelihood.

Authors: Guiyan Ni; Gerhard Moser; Naomi R Wray; S Hong Lee
Journal: Am J Hum Genet Date: 2018-05-10 Impact factor: 11.025