Literature DB >> 24313531

Spatial dependence of protein-water collective hydrogen-bond dynamics.

Matthias Heyden1, Douglas J Tobias.   

Abstract

Using molecular dynamics simulations, we analyze collective vibrations in the hydration water of a small globular protein. We develop tools that allow spatial resolution of correlated protein and water motion, and use them to reveal correlated vibrations that extend up to 10 Å from the protein surface at far-infrared/THz frequencies that are sensitive to the chemical properties of the protein surface. Our results provide the first detailed description of long-range effects on protein hydration water dynamics and highlight the differences between single particle and collective dynamics, which are relevant in interpreting experimental observations.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 24313531     DOI: 10.1103/PhysRevLett.111.218101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  18 in total

1.  Structural Relaxation Processes and Collective Dynamics of Water in Biomolecular Environments.

Authors:  Sara Capponi; Stephen H White; Douglas J Tobias; Matthias Heyden
Journal:  J Phys Chem B       Date:  2019-01-02       Impact factor: 2.991

2.  Biophysics: Enzymes surf the heat wave.

Authors:  A Joshua Wand
Journal:  Nature       Date:  2014-12-10       Impact factor: 49.962

Review 3.  Locating and Navigating Energy Transport Networks in Proteins.

Authors:  Korey M Reid; David M Leitner
Journal:  Methods Mol Biol       Date:  2021

4.  Identifying hydrophobic protein patches to inform protein interaction interfaces.

Authors:  Nicholas B Rego; Erte Xi; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-09       Impact factor: 11.205

5.  Hydration of counterions interacting with DNA double helix: a molecular dynamics study.

Authors:  Sergiy Perepelytsya
Journal:  J Mol Model       Date:  2018-06-22       Impact factor: 1.810

6.  Hydrogen Bond Network of Water around Protein Investigated with Terahertz and Infrared Spectroscopy.

Authors:  Keiichiro Shiraga; Yuichi Ogawa; Naoshi Kondo
Journal:  Biophys J       Date:  2016-12-20       Impact factor: 4.033

7.  Pressure effects on collective density fluctuations in water and protein solutions.

Authors:  Daniela Russo; Alessio Laloni; Alessandra Filabozzi; Matthias Heyden
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-09       Impact factor: 11.205

8.  Hydration Structure and Dynamics of Inhibitor-Bound HIV-1 Protease.

Authors:  Florian Leidner; Nese Kurt Yilmaz; Janet Paulsen; Yves A Muller; Celia A Schiffer
Journal:  J Chem Theory Comput       Date:  2018-04-18       Impact factor: 6.006

9.  Anomalously Rapid Hydration Water Diffusion Dynamics Near DNA Surfaces.

Authors:  John M Franck; Yuan Ding; Katherine Stone; Peter Z Qin; Songi Han
Journal:  J Am Chem Soc       Date:  2015-09-10       Impact factor: 15.419

10.  Mesodomain and Protein-Associated Solvent Phases with Temperature-Tunable (200-265 K) Dynamics Surround Ethanolamine Ammonia-Lyase in Globally Polycrystalline Aqueous Solution Containing Dimethyl Sulfoxide.

Authors:  Benjamen Nforneh; Kurt Warncke
Journal:  J Phys Chem B       Date:  2017-12-01       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.