Literature DB >> 24309994

The effects of stabilizing and directional selection on phenotypic and genotypic variation in a population of RNA enzymes.

Eric J Hayden1, Sinisa Bratulic, Iwo Koenig, Evandro Ferrada, Andreas Wagner.   

Abstract

The distribution of variation in a quantitative trait and its underlying distribution of genotypic diversity can both be shaped by stabilizing and directional selection. Understanding either distribution is important, because it determines a population's response to natural selection. Unfortunately, existing theory makes conflicting predictions about how selection shapes these distributions, and very little pertinent experimental evidence exists. Here we study a simple genetic system, an evolving RNA enzyme (ribozyme) in which a combination of high throughput genotyping and measurement of a biochemical phenotype allow us to address this question. We show that directional selection, compared to stabilizing selection, increases the genotypic diversity of an evolving ribozyme population. In contrast, it leaves the variance in the phenotypic trait unchanged.

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Year:  2013        PMID: 24309994     DOI: 10.1007/s00239-013-9604-x

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  34 in total

Review 1.  Perspective: Evolution and detection of genetic robustness.

Authors:  J Arjan G M de Visser; Joachim Hermisson; Günter P Wagner; Lauren Ancel Meyers; Homayoun Bagheri-Chaichian; Jeffrey L Blanchard; Lin Chao; James M Cheverud; Santiago F Elena; Walter Fontana; Greg Gibson; Thomas F Hansen; David Krakauer; Richard C Lewontin; Charles Ofria; Sean H Rice; George von Dassow; Andreas Wagner; Michael C Whitlock
Journal:  Evolution       Date:  2003-09       Impact factor: 3.694

2.  Evolution of an antibiotic resistance enzyme constrained by stability and activity trade-offs.

Authors:  Xiaojun Wang; George Minasov; Brian K Shoichet
Journal:  J Mol Biol       Date:  2002-06-28       Impact factor: 5.469

3.  Epistasis in polygenic traits and the evolution of genetic architecture under stabilizing selection.

Authors:  Joachim Hermisson; Thomas F Hansen; Günter P Wagner
Journal:  Am Nat       Date:  2003-05-02       Impact factor: 3.926

4.  Directed evolution of an RNA enzyme.

Authors:  A A Beaudry; G F Joyce
Journal:  Science       Date:  1992-07-31       Impact factor: 47.728

Review 5.  Mutational effects and the evolution of new protein functions.

Authors:  Misha Soskine; Dan S Tawfik
Journal:  Nat Rev Genet       Date:  2010-08       Impact factor: 53.242

6.  Rapid construction of empirical RNA fitness landscapes.

Authors:  Jason N Pitt; Adrian R Ferré-D'Amaré
Journal:  Science       Date:  2010-10-15       Impact factor: 47.728

7.  The population genetic theory of hidden variation and genetic robustness.

Authors:  Joachim Hermisson; Günter P Wagner
Journal:  Genetics       Date:  2004-12       Impact factor: 4.562

8.  A POPULATION GENETIC THEORY OF CANALIZATION.

Authors:  Günter P Wagner; Ginger Booth; Homayoun Bagheri-Chaichian
Journal:  Evolution       Date:  1997-04       Impact factor: 3.694

9.  Directional selection causes decanalization in a group I ribozyme.

Authors:  Eric J Hayden; Christian Weikert; Andreas Wagner
Journal:  PLoS One       Date:  2012-09-18       Impact factor: 3.240

10.  Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape.

Authors:  Daniel J Kvitek; Gavin Sherlock
Journal:  PLoS Genet       Date:  2011-04-28       Impact factor: 5.917

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  3 in total

1.  Limits of neutral drift: lessons from the in vitro evolution of two ribozymes.

Authors:  Katherine L Petrie; Gerald F Joyce
Journal:  J Mol Evol       Date:  2014-08-26       Impact factor: 2.395

2.  Analysis of in vitro evolution reveals the underlying distribution of catalytic activity among random sequences.

Authors:  Abe Pressman; Janina E Moretti; Gregory W Campbell; Ulrich F Müller; Irene A Chen
Journal:  Nucleic Acids Res       Date:  2017-08-21       Impact factor: 16.971

Review 3.  Elucidating the molecular architecture of adaptation via evolve and resequence experiments.

Authors:  Anthony Long; Gianni Liti; Andrej Luptak; Olivier Tenaillon
Journal:  Nat Rev Genet       Date:  2015-09-08       Impact factor: 53.242

  3 in total

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