| Literature DB >> 24302995 |
Dong Chu1, Hui-Peng Pan, Xian-Chun Li, Dong Guo, Yun-Li Tao, Bai-Ming Liu, You-Jun Zhang.
Abstract
BACKGROUND: Even though introductions of exotic species provide ready-made experiments of rapid evolution, few studies have examined the genetic structure of an exotic species shortly after its initial introduction and subsequent spread. To determine the genetic structure of its populations during the initial introduction, we investigated the invasive sweet potato whitefly (Bemisia tabaci Q, commonly known as B. tabaci biotype Q) in China, which was introduced in approximately 2003. A total of 619 B. tabaci Q individuals in 20 provinces throughout China were collected and analyzed using five microsatellite loci.Entities:
Mesh:
Year: 2013 PMID: 24302995 PMCID: PMC3841195 DOI: 10.1371/journal.pone.0079997
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Location of Chinese populations of B. tabaci Q in this study.
Eight clusters identified by BAPS (see text and Fig. 2): cluster I consisted of the populations indicated by green font (JL, LN, BJ, TJ, HeB, SX, SSX, SD, and SH); cluster II consisted of the populations indicated by red font (HeN, JS, AH, and JX); cluster III consisted of the populations indicated by yellow font (GX and HaiN); and cluster IV, V, VI, VII, and VIII each consisted of one population (CQ, XJ, HuB, HuN, and YN, respectively).
Site characteristics and genetic diversity indices of B. tabaci Q populations.
| Locality | Code | Date | Host |
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| Haidian, Beijing | BJ | 2011.8 | Eggplant, tomato, cotton | 42 | 4.80 | 2.0739 | 0.2762 | 0.4420 | 0.4367 |
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| Shijiazhuang, Hebei | HeB | 2011.8 | Eggplant, tomato, cotton | 35 | 3.80 | 2.3014 | 0.2649 | 0.4841 | 0.4771 |
| 0.8906 |
| Changchun, Jilin | JL | 2011.8 | Eggplant, tomato | 45 | 4.60 | 2.2124 | 0.3627 | 0.4830 | 0.4776 |
| 0.4063 |
| Yuncheng, Shanxi | SX | 2011.8 | Eggplant, cotton | 23 | 4.40 | 2.6189 | 0.2917 | 0.5034 | 0.4923 |
| 0.4063 |
| Yangling, Shanxi | SSX | 2011.8 | Eggplant, tomato, cotton | 36 | 5.60 | 2.0976 | 0.4285 | 0.4306 | 0.4244 |
| 0.4063 |
| Minhang, Shanghai | SH | 2011.8 | Eggplant, tomato | 30 | 4.80 | 2.2474 | 0.2692 | 0.4641 | 0.4563 |
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| Zhongan, Liaoning | LN | 2011.8 | Eggplant, tomato, cotton | 18 | 4.60 | 2.5085 | 0.3778 | 0.5613 | 0.5457 |
| 0.3125 |
| Jinan, Shandong | SD | 2011.8 | Eggplant, tomato, Japanese hop | 43 | 5.00 | 2.2808 | 0.3628 | 0.4909 | 0.4852 |
| 0.1094 |
| Wuhe, Tianjin | TJ | 2011.8 | Tomato | 11 | 3.60 | 2.1810 | 0.2545 | 0.4597 | 0.4388 |
| 0.1094 |
| Sanshigang, Anhui | AH | 2011.8 | Eggplant, tomato, cotton | 28 | 5.20 | 2.3981 | 0.2672 | 0.4830 | 0.4743 |
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| Luoyang, Henan | HeN | 2011.8 | Tomato, cotton | 11 | 3.80 | 2.2943 | 0.2727 | 0.4987 | 0.4760 |
| 0.1563 |
| Nanjing, Jiangsu | JS | 2011.8 | Eggplant, cotton, tomato | 45 | 5.20 | 2.5804 | 0.4698 | 0.5665 | 0.5601 |
| 0.6875 |
| Nanchang, Jiangxi | JX | 2011.8 | Eggplant, tomato | 30 | 4.80 | 2.2853 | 0.3069 | 0.4746 | 0.4666 |
| 0.1094 |
| Nanning, Guangxi | GX | 2011.8 | Cucumber, tomato | 20 | 4.20 | 2.5676 | 0.3600 | 0.4946 | 0.4822 |
| 0.4063 |
| Beipei, Chongqing | CQ | 2011.8 | Eggplant, tomato | 29 | 4.20 | 2.8972 | 0.2916 | 0.5642 | 0.5544 |
| 0.8906 |
| Haikou, Hainan | HaiN | 2011.8 | Eggplant, tomato | 21 | 4.40 | 2.4917 | 0.2762 | 0.5189 | 0.5065 |
| 0.3125 |
| Changsha, Hunan | HuN | 2011.8 | Eggplant, tomato, cotton | 42 | 5.80 | 2.7371 | 0.2158 | 0.5247 | 0.5183 |
| 0.1094 |
| Wuhan, Hubei | HuB | 2011.8 | Eggplant, tomato, cotton | 45 | 5.20 | 3.0546 | 0.4432 | 0.6004 | 0.5937 |
| 0.8906 |
| Tulufan, Xinjiang | XJ | 2011.8 | Eggplant, tomato, cotton | 39 | 4.20 | 2.5042 | 0.4333 | 0.5410 | 0.5341 |
| 0.8906 |
| Kunming, Yunnan | YN | 2012.8 | Eggplant, pepper | 26 | 3.20 | 1.9330 | 0.3846 | 0.3977 | 0.3901 |
| 0.8438 |
| Mean±SD | 31.0±11.2 | 4.57±0.67 | 2.4133±0.2806 | 0.3305±0.0741 | 0.4992±0.0504 | 0.4895±0.0504 | 0.3464±0.1396 | ||||
| Total | 619 | 10.60 | 2.8389 | 0.3405 | 0.5672 | 0.5668 | 0.3431 |
For each sample, the following are indicated: sampling site, population code, date of collection, host plant, sample size (N), average number of alleles per locus (Na), the effective number of alleles (Ne), the observed heterozygosity (Ho), the expected heterozygosity (He), and Nei's expected heterozygosity (Nei), estimator of the fixation index (Fis), and the Wilcoxon test P value for heterozygosity deficit compared to expectations at mutation-drift equilibrium (Pwil). Significant values for Fis and for heterozygosity deficiency are in bold.
Figure 2Bayesian individual clustering and Bayesian population clustering for the microsatellite data set of B. tabaci Q in China.
In both A and B, individuals are grouped by sampling location. Abbreviations shown at the top of panels A and B are code names of sampling locations as indicated in Figure 1. (A) Each individual is represented by a vertical bar partitioned into colored segments using BAPS. (B) Delineation of eight genetic clusters using BAPS. Each color indicates sampling localities belonging to each cluster.
Within-population tests for heterozygosity excess P-values according to three models (IAM, TPM, and SMM).
| Locality | Population code | Heterozygosity excess | ||
| IAM | TPM | SMM | ||
| Haidian, Beijing | BJ | 0.59373 | 0.98438 | 1.00000 |
| Shijiazhuang, Hebei | HeB | 0.10938 | 0.31250 | 0.92188 |
| Changchun, Jilin | JL | 0.40625 | 0.68750 | 0.98438 |
| Yuncheng, Shanxi | SX | 0.31250 | 0.68750 | 0.95313 |
| Yangling, Shanxi | SSX | 0.50000 | 0.68750 | 0.95313 |
| Minhang, Shanghai | SH | 0.89063 | 0.96875 | 1.00000 |
| Zhongan, Liaoning | LN | 0.40625 | 0.89063 | 0.96875 |
| Jinan, Shandong | SD | 0.59375 | 0.92188 | 0.98438 |
| Wuhe, Tianjin | TJ | 0.59375 | 0.92188 | 0.96875 |
| Sanshigang, Anhui | AH | 0.89063 | 0.96875 | 1.00000 |
| Luoyang, Henan | HeN | 0.09375 | 0.90625 | 0.96875 |
| Nanjing, Jiangsu | JS |
| 0.40625 | 0.95313 |
| Nanchang, Jiangxi | JX | 0.68750 | 0.92188 | 0.96875 |
| Nanning, Guangxi | GX | 0.59375 | 0.68750 | 0.68750 |
| Beipei, Chongqing | CQ |
| 0.31250 | 0.40625 |
| Haikou, Hainan | HaiN | 0.31250 | 0.89063 | 0.96875 |
| Changsha, Hunan | HuN | 0.50000 | 0.92188 | 0.96875 |
| Wuhan, Hubei | HuB |
| 0.31250 | 0.59375 |
| Tulufan, Xinjiang | XJ |
| 0.31250 | 0.59375 |
| Kunming, Yunnan | YN | 0.09375 | 0.43750 | 0.90625 |
Bold indicates significance at P<0.05.
Population pairwise Fst.
| Population code | BJ | HeB | JL | SX | SSX | SH | LN | SD | TJ | AH | HeN | JS | JX | GX | CQ | HaiN | HuN | HuB | XJ |
| HeB |
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| JL |
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| SX |
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| SSX |
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| SH | 0.0102 |
| 0.0087 | 0.0119 | 0.0119 | ||||||||||||||
| LN |
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| −0.0005 | 0.0182 |
| 0.0305 | |||||||||||||
| SD |
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| 0.0064 | 0.0114 | 0.0059 | 0.0011 | 0.0173 | ||||||||||||
| TJ | −0.0098 |
| −0.0137 | 0.0109 | −0.0005 | −0.0183 | 0.0154 | −0.0195 | |||||||||||
| AH |
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| 0.0132 | ||||||||||
| HeN | 0.0058 | 0.0057 | 0.0063 | 0.0139 |
| −0.0213 | 0.0114 | 0.0155 | −0.0101 | −0.0072 | |||||||||
| JS |
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| 0.0166 |
| 0.0119 | ||||||||
| JX |
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| 0.0022 |
| 0.0223 | −0.0038 |
| −0.0172 |
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| GX |
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| CQ |
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| HaiN |
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| 0.0166 |
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| HuN |
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| HuB |
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| XJ |
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| 0.0121 |
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| YN |
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Significant values for pairwise Fst are in bold.
Analysis of molecular variance (AMOVA) for population structures of Bemisia tabaci Q.
| Source of variation |
| Sum of squares | Variance components | Percentage of variation | Fixation indices |
| Among clusters | 7 | 185.492 | 0.17761 Va | 11.97 |
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| Among populations within clusters | 12 | 36.019 | 0.02959 Vb | 1.99 |
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| Within clusters | 1224 | 1562.076 | 1.27621 Vc | 86.03 |
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| Total | 1243 | 1783.588 | 1.48340 |