Literature DB >> 24302851

Biostimulation Reveals Functional Redundancy of Anthracene-Degrading Bacteria in Polycyclic Aromatic Hydrocarbon-Contaminated Soil.

Sage R Dunlevy1, David R Singleton, Michael D Aitken.   

Abstract

Stable-isotope probing was previously used to identify bacterial anthracene-degraders in untreated soil from a former manufactured gas plant site. However, subsequent pyrosequence analyses of total bacterial communities and quantification of 16S rRNA genes indicated that relative abundances of the predominant anthracene-degrading bacteria (designated Anthracene Group 1) diminished as a result of biological treatment conditions in lab-scale, aerobic bioreactors. This study identified Alphaproteobacterial anthracene-degrading bacteria in bioreactor-treated soil which were dissimilar to those previously identified. The largest group of sequences was from the Alterythrobacter genus while other groups of sequences were associated with bacteria within the order Rhizobiales and the genus Bradyrhizobium. Conditions in the bioreactor enriched for organisms capable of degrading anthracene which were not the same as those identified as dominant degraders in the untreated soil. Further, these data suggest that identification of polycyclic aromatic hydrocarbon-degrading bacteria in contaminated but untreated soil may be a poor indicator of the most active degraders during biological treatment.

Entities:  

Keywords:  anthracene; bioremediation; polycyclic aromatic hydrocarbons; stable-isotope probing

Year:  2013        PMID: 24302851      PMCID: PMC3833303          DOI: 10.1089/ees.2013.0067

Source DB:  PubMed          Journal:  Environ Eng Sci        ISSN: 1092-8758            Impact factor:   1.907


  45 in total

1.  Multiple sequence alignment using ClustalW and ClustalX.

Authors:  Julie D Thompson; Toby J Gibson; Des G Higgins
Journal:  Curr Protoc Bioinformatics       Date:  2002-08

2.  Changes in bacterial community of anthracene bioremediation in municipal solid waste composting soil.

Authors:  Shu-ying Zhang; Qing-feng Wang; Rui Wan; Shu-guang Xie
Journal:  J Zhejiang Univ Sci B       Date:  2011-09       Impact factor: 3.066

3.  Pyrosequence analyses of bacterial communities during simulated in situ bioremediation of polycyclic aromatic hydrocarbon-contaminated soil.

Authors:  David R Singleton; Maiysha D Jones; Stephen D Richardson; Michael D Aitken
Journal:  Appl Microbiol Biotechnol       Date:  2012-11-07       Impact factor: 4.813

4.  Synthesis of uniformly 13C-labeled polycyclic aromatic hydrocarbons.

Authors:  Zhenfa Zhang; Ramiah Sangaiah; Avram Gold; Louise M Ball
Journal:  Org Biomol Chem       Date:  2011-06-13       Impact factor: 3.876

5.  Stable-isotope probing of the polycyclic aromatic hydrocarbon-degrading bacterial guild in a contaminated soil.

Authors:  Maiysha D Jones; Douglas W Crandell; David R Singleton; Michael D Aitken
Journal:  Environ Microbiol       Date:  2011-05-12       Impact factor: 5.491

6.  Alteromonas as a key agent of polycyclic aromatic hydrocarbon biodegradation in crude oil-contaminated coastal sediment.

Authors:  Hyun Mi Jin; Jeong Myeong Kim; Hyo Jung Lee; Eugene L Madsen; Che Ok Jeon
Journal:  Environ Sci Technol       Date:  2012-06-27       Impact factor: 9.028

7.  Stable-isotope probing of bacteria capable of degrading salicylate, naphthalene, or phenanthrene in a bioreactor treating contaminated soil.

Authors:  David R Singleton; Sabrina N Powell; Ramiah Sangaiah; Avram Gold; Louise M Ball; Michael D Aitken
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

8.  Conversion of polycyclic aromatic hydrocarbons by Sphingomonas sp. VKM B-2434.

Authors:  Mikhail Baboshin; Vladimir Akimov; Boris Baskunov; Timothy L Born; Shahamat U Khan; Ludmila Golovleva
Journal:  Biodegradation       Date:  2007-10-24       Impact factor: 3.909

9.  Effect of incubation conditions on the enrichment of pyrene-degrading bacteria identified by stable-isotope probing in an aged, PAH-contaminated soil.

Authors:  Maiysha D Jones; David R Singleton; Darryl P Carstensen; Sabrina N Powell; Julie S Swanson; Frederic K Pfaender; Michael D Aitken
Journal:  Microb Ecol       Date:  2007-12-29       Impact factor: 4.552

10.  Classification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Mycobacterium sp. strain PYR-1, as Mycobacterium vanbaalenii sp. nov.

Authors:  Ashraf A Khan; Seong-Jae Kim; Donald D Paine; Carl E Cerniglia
Journal:  Int J Syst Evol Microbiol       Date:  2002-11       Impact factor: 2.747

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  7 in total

1.  Description of Immundisolibacter cernigliae gen. nov., sp. nov., a high-molecular-weight polycyclic aromatic hydrocarbon-degrading bacterium within the class Gammaproteobacteria, and proposal of Immundisolibacterales ord. nov. and Immundisolibacteraceae fam. nov.

Authors:  Elizabeth M Corteselli; Michael D Aitken; David R Singleton
Journal:  Int J Syst Evol Microbiol       Date:  2017-05-05       Impact factor: 2.747

2.  Identification of anthraquinone-degrading bacteria in soil contaminated with polycyclic aromatic hydrocarbons.

Authors:  Elyse A Rodgers-Vieira; Zhenfa Zhang; Alden C Adrion; Avram Gold; Michael D Aitken
Journal:  Appl Environ Microbiol       Date:  2015-03-27       Impact factor: 4.792

3.  Identifying bioaugmentation candidates for bioremediation of polycyclic aromatic hydrocarbons in contaminated estuarine sediment of the Elizabeth River, VA, USA.

Authors:  Savannah J Volkoff; Daniel L Rodriguez; David R Singleton; Alexander W McCumber; Michael D Aitken; Jill R Stewart; Claudia K Gunsch
Journal:  Appl Microbiol Biotechnol       Date:  2022-01-28       Impact factor: 4.813

4.  Soil Characteristics Constrain the Response of Microbial Communities and Associated Hydrocarbon Degradation Genes during Phytoremediation.

Authors:  Sara Correa-García; Karelle Rheault; Julien Tremblay; Armand Séguin; Etienne Yergeau
Journal:  Appl Environ Microbiol       Date:  2021-01-04       Impact factor: 4.792

5.  Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature.

Authors:  Rafael Bargiela; Francesca Mapelli; David Rojo; Bessem Chouaia; Jesús Tornés; Sara Borin; Michael Richter; Mercedes V Del Pozo; Simone Cappello; Christoph Gertler; María Genovese; Renata Denaro; Mónica Martínez-Martínez; Stilianos Fodelianakis; Ranya A Amer; David Bigazzi; Xifang Han; Jianwei Chen; Tatyana N Chernikova; Olga V Golyshina; Mouna Mahjoubi; Atef Jaouanil; Fatima Benzha; Mirko Magagnini; Emad Hussein; Fuad Al-Horani; Ameur Cherif; Mohamed Blaghen; Yasser R Abdel-Fattah; Nicolas Kalogerakis; Coral Barbas; Hanan I Malkawi; Peter N Golyshin; Michail M Yakimov; Daniele Daffonchio; Manuel Ferrer
Journal:  Sci Rep       Date:  2015-06-29       Impact factor: 4.379

6.  Impacts of dimethyl phthalate on the bacterial community and functions in black soils.

Authors:  Zhi-Gang Wang; Yun-Long Hu; Wei-Hui Xu; Shuai Liu; Ying Hu; Ying Zhang
Journal:  Front Microbiol       Date:  2015-05-05       Impact factor: 5.640

7.  Chronic Environmental Perturbation Influences Microbial Community Assembly Patterns.

Authors:  Lloyd D Potts; Alex Douglas; Luis J Perez Calderon; James A Anderson; Ursula Witte; James I Prosser; Cécile Gubry-Rangin
Journal:  Environ Sci Technol       Date:  2022-02-01       Impact factor: 9.028

  7 in total

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