Literature DB >> 24300385

Enhanced splice correction by 3', 5'-serinol and 2'-(ω-O-methylserinol) guarded OMe-RNA/DNA mixmers in cells.

Venubabu Kotikam1, Andrey A Arzumanov2, Michael J Gait2, Vaijayanti A Kumar1.   

Abstract

Development of artificial nucleic acids for therapeutic applications warrants that the oligomers be endowed with high specificity, enzymatic stability and with no/reduced off-target effects. The balance between strength of the duplex with target RNA and enzyme stability is therefore the key factor for the designed modification. The chiral serinol derivative combines the attributes of amino- and methoxy- substitution when at 2'- position and at 3'- and 5'- ends, effectively balancing the duplex stability and resistance to hydrolytic enzymes. The biological effect seen is the remarkable improvement in splice correction by the steric blocking antisense oligonucleotide with just 4 modified units, i.e ~20% substitution with R-aminomethoxypropyloxy (R-AMP)-thymidine within the 2'-OMe 18mer sequence.

Entities:  

Keywords:  antisense; oligonucleotides; splice correction; steric-blocking

Mesh:

Substances:

Year:  2013        PMID: 24300385      PMCID: PMC3962517          DOI: 10.4161/adna.27279

Source DB:  PubMed          Journal:  Artif DNA PNA XNA        ISSN: 1949-095X


  27 in total

1.  Determination of the role of the human RNase H1 in the pharmacology of DNA-like antisense drugs.

Authors:  Hongjiang Wu; Walt F Lima; Hong Zhang; Amy Fan; Hong Sun; Stanley T Crooke
Journal:  J Biol Chem       Date:  2004-02-11       Impact factor: 5.157

2.  Properties of 2'-fluorothymidine-containing oligonucleotides: interaction with restriction endonuclease EcoRV.

Authors:  D M Williams; F Benseler; F Eckstein
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

3.  Short, terminally modified 2'-OMe RNAs as inhibitors of microRNA.

Authors:  Jenny Blechinger; Hanna Pieper; Paul Marzenell; Larisa Kovbasyuk; Andrius Serva; Vytaute Starkuviene; Holger Erfle; Andriy Mokhir
Journal:  Chem Commun (Camb)       Date:  2013-08-28       Impact factor: 6.222

Review 4.  RNA targeting therapeutics: molecular mechanisms of antisense oligonucleotides as a therapeutic platform.

Authors:  C Frank Bennett; Eric E Swayze
Journal:  Annu Rev Pharmacol Toxicol       Date:  2010       Impact factor: 13.820

5.  Up-regulation of luciferase gene expression with antisense oligonucleotides: implications and applications in functional assay development.

Authors:  S H Kang; M J Cho; R Kole
Journal:  Biochemistry       Date:  1998-05-05       Impact factor: 3.162

6.  Structural origins of the exonuclease resistance of a zwitterionic RNA.

Authors:  M Teplova; S T Wallace; V Tereshko; G Minasov; A M Symons; P D Cook; M Manoharan; M Egli
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

Review 7.  Morpholino antisense oligomers: design, preparation, and properties.

Authors:  J Summerton; D Weller
Journal:  Antisense Nucleic Acid Drug Dev       Date:  1997-06

8.  Inhibition of HIV-1 Tat-dependent trans activation by steric block chimeric 2'-O-methyl/LNA oligoribonucleotides.

Authors:  A Arzumanov; A P Walsh; V K Rajwanshi; R Kumar; J Wengel; M J Gait
Journal:  Biochemistry       Date:  2001-12-04       Impact factor: 3.162

9.  Synthesis and biophysical evaluation of 2',4'-constrained 2'O-methoxyethyl and 2',4'-constrained 2'O-ethyl nucleic acid analogues.

Authors:  Punit P Seth; Guillermo Vasquez; Charles A Allerson; Andres Berdeja; Hans Gaus; Garth A Kinberger; Thazha P Prakash; Michael T Migawa; Balkrishen Bhat; Eric E Swayze
Journal:  J Org Chem       Date:  2010-03-05       Impact factor: 4.354

10.  Restoration of correct splicing in thalassemic pre-mRNA by antisense oligonucleotides.

Authors:  Z Dominski; R Kole
Journal:  Proc Natl Acad Sci U S A       Date:  1993-09-15       Impact factor: 11.205

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