Literature DB >> 24296784

A current perspective of autophagosome biogenesis.

Shusaku T Shibutani1, Tamotsu Yoshimori1.   

Abstract

Autophagy is a bulk degradation system induced by cellular stresses such as nutrient starvation. Its function relies on the formation of double-membrane vesicles called autophagosomes. Unlike other organelles that appear to stably exist in the cell, autophagosomes are formed on demand, and once their formation is initiated, it proceeds surprisingly rapidly. How and where this dynamic autophagosome formation takes place has been a long-standing question, but the discovery of Atg proteins in the 1990's significantly accelerated our understanding of autophagosome biogenesis. In this review, we will briefly introduce each Atg functional unit in relation to autophagosome biogenesis, and then discuss the origin of the autophagosomal membrane with an introduction to selected recent studies addressing this problem.

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Year:  2013        PMID: 24296784      PMCID: PMC3879706          DOI: 10.1038/cr.2013.159

Source DB:  PubMed          Journal:  Cell Res        ISSN: 1001-0602            Impact factor:   25.617


  105 in total

Review 1.  Autophagy: renovation of cells and tissues.

Authors:  Noboru Mizushima; Masaaki Komatsu
Journal:  Cell       Date:  2011-11-11       Impact factor: 41.582

2.  Structures containing Atg9A and the ULK1 complex independently target depolarized mitochondria at initial stages of Parkin-mediated mitophagy.

Authors:  Eisuke Itakura; Chieko Kishi-Itakura; Ikuko Koyama-Honda; Noboru Mizushima
Journal:  J Cell Sci       Date:  2012-01-24       Impact factor: 5.285

3.  AP1 is essential for generation of autophagosomes from the trans-Golgi network.

Authors:  Yajuan Guo; Chunmei Chang; Rui Huang; Bo Liu; Lan Bao; Wei Liu
Journal:  J Cell Sci       Date:  2012-02-10       Impact factor: 5.285

4.  The WD40 repeat PtdIns(3)P-binding protein EPG-6 regulates progression of omegasomes to autophagosomes.

Authors:  Qun Lu; Peiguo Yang; Xinxin Huang; Wanqiu Hu; Bin Guo; Fan Wu; Long Lin; Attila L Kovács; Li Yu; Hong Zhang
Journal:  Dev Cell       Date:  2011-07-28       Impact factor: 12.270

Review 5.  Endoplasmic reticulum-mitochondria contacts: function of the junction.

Authors:  Ashley A Rowland; Gia K Voeltz
Journal:  Nat Rev Mol Cell Biol       Date:  2012-09-20       Impact factor: 94.444

6.  Atg16L2, a novel isoform of mammalian Atg16L that is not essential for canonical autophagy despite forming an Atg12–5-16L2 complex.

Authors:  Koutaro Ishibashi; Naonobu Fujita; Eiko Kanno; Hiroko Omori; Tamotsu Yoshimori; Takashi Itoh; Mitsunori Fukuda
Journal:  Autophagy       Date:  2011-12       Impact factor: 16.016

7.  Atg9 vesicles are an important membrane source during early steps of autophagosome formation.

Authors:  Hayashi Yamamoto; Soichiro Kakuta; Tomonobu M Watanabe; Akira Kitamura; Takayuki Sekito; Chika Kondo-Kakuta; Rie Ichikawa; Masataka Kinjo; Yoshinori Ohsumi
Journal:  J Cell Biol       Date:  2012-07-23       Impact factor: 10.539

8.  Dynamic and transient interactions of Atg9 with autophagosomes, but not membrane integration, are required for autophagy.

Authors:  A Orsi; M Razi; H C Dooley; D Robinson; A E Weston; L M Collinson; S A Tooze
Journal:  Mol Biol Cell       Date:  2012-03-28       Impact factor: 4.138

9.  TBC1D14 regulates autophagosome formation via Rab11- and ULK1-positive recycling endosomes.

Authors:  Andrea Longatti; Christopher A Lamb; Minoo Razi; Shin-ichiro Yoshimura; Francis A Barr; Sharon A Tooze
Journal:  J Cell Biol       Date:  2012-05-21       Impact factor: 10.539

10.  Mechanism and functions of membrane binding by the Atg5-Atg12/Atg16 complex during autophagosome formation.

Authors:  Julia Romanov; Marta Walczak; Iosune Ibiricu; Stefan Schüchner; Egon Ogris; Claudine Kraft; Sascha Martens
Journal:  EMBO J       Date:  2012-10-12       Impact factor: 11.598

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  133 in total

1.  CapZ regulates autophagosomal membrane shaping by promoting actin assembly inside the isolation membrane.

Authors:  Na Mi; Yang Chen; Shuai Wang; Mengran Chen; Mingkun Zhao; Guang Yang; Meisheng Ma; Qian Su; Sai Luo; Jingwen Shi; Jia Xu; Qiang Guo; Ning Gao; Yujie Sun; Zhucheng Chen; Li Yu
Journal:  Nat Cell Biol       Date:  2015-08-03       Impact factor: 28.824

2.  Coordination of autophagosome-lysosome fusion and transport by a Klp98A-Rab14 complex in Drosophila.

Authors:  Caroline Mauvezin; Amanda L Neisch; Carlos I Ayala; Jung Kim; Abigail Beltrame; Christopher R Braden; Melissa K Gardner; Thomas S Hays; Thomas P Neufeld
Journal:  J Cell Sci       Date:  2016-01-13       Impact factor: 5.285

Review 3.  Autophagy inhibitors.

Authors:  Benoit Pasquier
Journal:  Cell Mol Life Sci       Date:  2015-12-11       Impact factor: 9.261

Review 4.  An overview of macroautophagy in yeast.

Authors:  Xin Wen; Daniel J Klionsky
Journal:  J Mol Biol       Date:  2016-02-22       Impact factor: 5.469

5.  Group A Streptococcus modulates RAB1- and PIK3C3 complex-dependent autophagy.

Authors:  Hirotaka Toh; Takashi Nozawa; Atsuko Minowa-Nozawa; Miyako Hikichi; Shintaro Nakajima; Chihiro Aikawa; Ichiro Nakagawa
Journal:  Autophagy       Date:  2019-06-14       Impact factor: 16.016

Review 6.  ATG16L1: A multifunctional susceptibility factor in Crohn disease.

Authors:  Mohammad Salem; Mette Ammitzboell; Kris Nys; Jakob Benedict Seidelin; Ole Haagen Nielsen
Journal:  Autophagy       Date:  2015-04-03       Impact factor: 16.016

Review 7.  Autophagic activity in neuronal cell death.

Authors:  Robert W Button; Shouqing Luo; David C Rubinsztein
Journal:  Neurosci Bull       Date:  2015-06-15       Impact factor: 5.203

8.  The insufficiency of ATG4A in macroautophagy.

Authors:  Nathan Nguyen; Taryn J Olivas; Antonio Mires; Jiaxin Jin; Shenliang Yu; Lin Luan; Shanta Nag; Karlina J Kauffman; Thomas J Melia
Journal:  J Biol Chem       Date:  2020-07-30       Impact factor: 5.157

9.  Selective autophagy: xenophagy.

Authors:  Kyle A Bauckman; Nana Owusu-Boaitey; Indira U Mysorekar
Journal:  Methods       Date:  2014-12-11       Impact factor: 3.608

Review 10.  Mechanisms of Selective Autophagy in Normal Physiology and Cancer.

Authors:  Joseph D Mancias; Alec C Kimmelman
Journal:  J Mol Biol       Date:  2016-03-04       Impact factor: 5.469

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