Literature DB >> 24296570

The singular quest for a universal tree of life.

Jan Sapp1, George E Fox.   

Abstract

Carl Woese developed a unique research program, based on rRNA, for discerning bacterial relationships and constructing a universal tree of life. Woese's interest in the evolution of the genetic code led to him to investigate the deep roots of evolution, develop the concept of the progenote, and conceive of the Archaea. In so doing, he and his colleagues at the University of Illinois in Urbana revolutionized microbiology and brought the classification of microbes into an evolutionary framework. Woese also provided definitive evidence for the role of symbiosis in the evolution of the eukaryotic cell while underscoring the importance of lateral gene transfer in microbial evolution. Woese and colleagues' proposal of three fundamental domains of life was brought forward in direct conflict with the prokaryote-eukaryote dichotomy. Together with several colleagues and associates, he brought together diverse evidence to support the rRNA evidence for the fundamentally tripartite nature of life. This paper aims to provide insight into his accomplishments, how he achieved them, and his place in the history of biology.

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Year:  2013        PMID: 24296570      PMCID: PMC3973382          DOI: 10.1128/MMBR.00038-13

Source DB:  PubMed          Journal:  Microbiol Mol Biol Rev        ISSN: 1092-2172            Impact factor:   11.056


  31 in total

1.  STRUCTURE OF A RIBONUCLEIC ACID.

Authors:  R W HOLLEY; J APGAR; G A EVERETT; J T MADISON; M MARQUISEE; S H MERRILL; J R PENSWICK; A ZAMIR
Journal:  Science       Date:  1965-03-19       Impact factor: 47.728

2.  The Ribosomal Database Project.

Authors:  G J Olsen; R Overbeek; N Larsen; T L Marsh; M J McCaughey; M A Maciukenas; W M Kuan; T J Macke; Y Xing; C R Woese
Journal:  Nucleic Acids Res       Date:  1992-05-11       Impact factor: 16.971

3.  Phylogenetic structure of the prokaryotic domain: the primary kingdoms.

Authors:  C R Woese; G E Fox
Journal:  Proc Natl Acad Sci U S A       Date:  1977-11       Impact factor: 11.205

4.  Protist classification and the kingdoms of organisms.

Authors:  R H Whittaker; L Margulis
Journal:  Biosystems       Date:  1978-04       Impact factor: 1.973

5.  Detailed molecular model for transfer ribonucleic acid.

Authors:  M Levitt
Journal:  Nature       Date:  1969-11-22       Impact factor: 49.962

Review 6.  Symbiotic theory of the origin of eukaryotic organelles; criteria for proof.

Authors:  L Margulis
Journal:  Symp Soc Exp Biol       Date:  1975

7.  A comparison of the 16S ribosomal RNAs from mesophilic and thermophilic bacilli: some modifications in the Sanger method for RNA sequencing.

Authors:  C Woese; M Sogin; D Stahl; B J Lewis; L Bonen
Journal:  J Mol Evol       Date:  1976-04-09       Impact factor: 2.395

8.  The phylogeny of prokaryotes.

Authors:  G E Fox; E Stackebrandt; R B Hespell; J Gibson; J Maniloff; T A Dyer; R S Wolfe; W E Balch; R S Tanner; L J Magrum; L B Zablen; R Blakemore; R Gupta; L Bonen; B J Lewis; D A Stahl; K R Luehrsen; K N Chen; C R Woese
Journal:  Science       Date:  1980-07-25       Impact factor: 47.728

9.  New approach to the cultivation of methanogenic bacteria: 2-mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressureized atmosphere.

Authors:  W E Balch; R S Wolfe
Journal:  Appl Environ Microbiol       Date:  1976-12       Impact factor: 4.792

10.  Complete nucleotide sequence of a 23S ribosomal RNA gene from Bacillus stearothermophilus.

Authors:  J Kop; V Wheaton; R Gupta; C R Woese; H F Noller
Journal:  DNA       Date:  1984-10
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  8 in total

Review 1.  Emergence of Life on Earth: A Physicochemical Jigsaw Puzzle.

Authors:  Jan Spitzer
Journal:  J Mol Evol       Date:  2016-12-19       Impact factor: 2.395

2.  Evolution of viruses and cells: do we need a fourth domain of life to explain the origin of eukaryotes?

Authors:  David Moreira; Purificación López-García
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-09-26       Impact factor: 6.237

Review 3.  Carl Woese's vision of cellular evolution and the domains of life.

Authors:  Eugene V Koonin
Journal:  RNA Biol       Date:  2014-01-16       Impact factor: 4.652

4.  Introduction to special Carl Woese issue in RNA Biology.

Authors:  Robin R Gutell
Journal:  RNA Biol       Date:  2014-03-17       Impact factor: 4.652

Review 5.  Beyond 16S rRNA Community Profiling: Intra-Species Diversity in the Gut Microbiota.

Authors:  Kirsten M Ellegaard; Philipp Engel
Journal:  Front Microbiol       Date:  2016-09-21       Impact factor: 5.640

Review 6.  Casting a long shadow in the classroom: an educator's perspective of the contributions of Carl Woese.

Authors:  Mark Martin
Journal:  RNA Biol       Date:  2014-02-07       Impact factor: 4.652

Review 7.  Remembering Carl Woese.

Authors:  Kenneth R Luehrsen
Journal:  RNA Biol       Date:  2014-03-07       Impact factor: 4.652

Review 8.  Molecular phylogenetics before sequences: oligonucleotide catalogs as k-mer spectra.

Authors:  Mark A Ragan; Guillaume Bernard; Cheong Xin Chan
Journal:  RNA Biol       Date:  2014-01-14       Impact factor: 4.652

  8 in total

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