Literature DB >> 24290192

Ldb1 complexes: the new master regulators of erythroid gene transcription.

Paul E Love1, Claude Warzecha2, LiQi Li2.   

Abstract

Elucidation of the genetic pathways that control red blood cell development has been a central goal of erythropoiesis research over the past decade. Notably, data from several recent studies have provided new insights into the regulation of erythroid gene transcription. Transcription profiling demonstrates that erythropoiesis is mainly controlled by a small group of lineage-restricted transcription factors [Gata binding protein 1 (Gata1), T cell acute lymphocytic leukemia 1 protein (Tal1), and Erythroid Kruppel-like factor (EKLF; henceforth referred to as Klf1)]. Binding-site mapping using ChIP-Seq indicates that most DNA-bound Gata1 and Tal1 proteins are contained within higher order complexes (Ldb1 complexes) that include the nuclear adapters Ldb1 and Lmo2. Ldb1 complexes regulate Klf1, and Ldb1 complex-binding sites frequently colocalize with Klf1 at erythroid genes and cis-regulatory elements, indicating strong functional synergy between Gata1, Tal1, and Klf1. Together with new data demonstrating that Ldb1 can mediate long-range promoter-enhancer interactions, these findings provide a foundation for the first comprehensive models of the global regulation of erythroid gene transcription. Published by Elsevier Ltd.

Entities:  

Keywords:  ChIP-Seq; Gata1; Klf1; Ldb1 complexes; Tal1; erythropoiesis; transcriptional regulation

Mesh:

Substances:

Year:  2013        PMID: 24290192      PMCID: PMC3882320          DOI: 10.1016/j.tig.2013.10.001

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  75 in total

1.  A core erythroid transcriptional network is repressed by a master regulator of myelo-lymphoid differentiation.

Authors:  Sandeep N Wontakal; Xingyi Guo; Cameron Smith; Thomas MacCarthy; Emery H Bresnick; Aviv Bergman; Michael P Snyder; Sherman M Weissman; Deyou Zheng; Arthur I Skoultchi
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-22       Impact factor: 11.205

2.  Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration.

Authors:  Weisheng Wu; Yong Cheng; Cheryl A Keller; Jason Ernst; Swathi Ashok Kumar; Tejaswini Mishra; Christapher Morrissey; Christine M Dorman; Kuan-Bei Chen; Daniela Drautz; Belinda Giardine; Yoichiro Shibata; Lingyun Song; Max Pimkin; Gregory E Crawford; Terrence S Furey; Manolis Kellis; Webb Miller; James Taylor; Stephan C Schuster; Yu Zhang; Francesca Chiaromonte; Gerd A Blobel; Mitchell J Weiss; Ross C Hardison
Journal:  Genome Res       Date:  2011-07-27       Impact factor: 9.043

Review 3.  The role of the GATA2 transcription factor in normal and malignant hematopoiesis.

Authors:  Carmen Vicente; Ana Conchillo; María A García-Sánchez; María D Odero
Journal:  Crit Rev Oncol Hematol       Date:  2011-05-24       Impact factor: 6.312

4.  Genome-wide analysis shows that Ldb1 controls essential hematopoietic genes/pathways in mouse early development and reveals novel players in hematopoiesis.

Authors:  Athina Mylona; Charlotte Andrieu-Soler; Supat Thongjuea; Andrea Martella; Eric Soler; Ruud Jorna; Jun Hou; Christel Kockx; Wilfred van Ijcken; Boris Lenhard; Frank Grosveld
Journal:  Blood       Date:  2013-02-06       Impact factor: 22.113

Review 5.  The multifunctional role of EKLF/KLF1 during erythropoiesis.

Authors:  Miroslawa Siatecka; James J Bieker
Journal:  Blood       Date:  2011-05-25       Impact factor: 22.113

6.  Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor.

Authors:  Wulan Deng; Jongjoo Lee; Hongxin Wang; Jeff Miller; Andreas Reik; Philip D Gregory; Ann Dean; Gerd A Blobel
Journal:  Cell       Date:  2012-06-08       Impact factor: 41.582

7.  Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development.

Authors:  Ralph Stadhouders; Supat Thongjuea; Charlotte Andrieu-Soler; Robert-Jan Palstra; Jan Christian Bryne; Anita van den Heuvel; Mary Stevens; Ernie de Boer; Christel Kockx; Antoine van der Sloot; Mirjam van den Hout; Wilfred van Ijcken; Dirk Eick; Boris Lenhard; Frank Grosveld; Eric Soler
Journal:  EMBO J       Date:  2011-12-13       Impact factor: 11.598

8.  Genome-wide ChIP-Seq reveals a dramatic shift in the binding of the transcription factor erythroid Kruppel-like factor during erythrocyte differentiation.

Authors:  Andre M Pilon; Subramanian S Ajay; Swathi Ashok Kumar; Laurie A Steiner; Praveen F Cherukuri; Stephen Wincovitch; Stacie M Anderson; James C Mullikin; Patrick G Gallagher; Ross C Hardison; Elliott H Margulies; David M Bodine
Journal:  Blood       Date:  2011-09-06       Impact factor: 22.113

9.  Structural basis of simultaneous recruitment of the transcriptional regulators LMO2 and FOG1/ZFPM1 by the transcription factor GATA1.

Authors:  Lorna Wilkinson-White; Roland Gamsjaeger; Siavoush Dastmalchi; Beeke Wienert; Philippa H Stokes; Merlin Crossley; Joel P Mackay; Jacqueline M Matthews
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-15       Impact factor: 11.205

10.  Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq.

Authors:  Michael R Tallack; Graham W Magor; Benjamin Dartigues; Lei Sun; Stephen Huang; Jessica M Fittock; Sally V Fry; Evgeny A Glazov; Timothy L Bailey; Andrew C Perkins
Journal:  Genome Res       Date:  2012-07-26       Impact factor: 9.043

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  56 in total

1.  The LMO2 oncogene regulates DNA replication in hematopoietic cells.

Authors:  Marie-Claude Sincennes; Magali Humbert; Benoît Grondin; Véronique Lisi; Diogo F T Veiga; André Haman; Christophe Cazaux; Nazar Mashtalir; El Bachir Affar; Alain Verreault; Trang Hoang
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-13       Impact factor: 11.205

Review 2.  Erythro-megakaryocytic transcription factors associated with hereditary anemia.

Authors:  John D Crispino; Mitchell J Weiss
Journal:  Blood       Date:  2014-03-20       Impact factor: 22.113

3.  The islet-expressed Lhx1 transcription factor interacts with Islet-1 and contributes to glucose homeostasis.

Authors:  Maigen Bethea; Yanping Liu; Alexa K Wade; Rachel Mullen; Rajesh Gupta; Vasily Gelfanov; Richard DiMarchi; Sushant Bhatnagar; Richard Behringer; Kirk M Habegger; Chad S Hunter
Journal:  Am J Physiol Endocrinol Metab       Date:  2019-01-08       Impact factor: 4.310

4.  Chewing the Fat: A Metabolic Role for Ldb1 Beyond the Pancreas?

Authors:  Emily K Sims
Journal:  Endocrinology       Date:  2017-04-29       Impact factor: 4.736

Review 5.  The GATA factor revolution in hematology.

Authors:  Koichi R Katsumura; Emery H Bresnick
Journal:  Blood       Date:  2017-02-08       Impact factor: 22.113

6.  The molecular genetic background leading to the formation of the human erythroid-specific Xga/CD99 blood groups.

Authors:  Chih-Chun Yeh; Ching-Jin Chang; Yuh-Ching Twu; Chen-Chung Chu; Bi-Shan Liu; Ji-Ting Huang; Shu-Ting Hung; Yung-Syu Chan; Yi-Jui Tsai; Sheng-Wei Lin; Marie Lin; Lung-Chih Yu
Journal:  Blood Adv       Date:  2018-08-14

7.  Comprehensive proteomic analysis of murine terminal erythroid differentiation.

Authors:  Emilie-Fleur Gautier; Marjorie Leduc; Meriem Ladli; Vincent P Schulz; Carine Lefèvre; Ismael Boussaid; Michaela Fontenay; Catherine Lacombe; Frédérique Verdier; François Guillonneau; Christopher D Hillyer; Narla Mohandas; Patrick G Gallagher; Patrick Mayeux
Journal:  Blood Adv       Date:  2020-04-14

8.  The stage-dependent roles of Ldb1 and functional redundancy with Ldb2 in mammalian retinogenesis.

Authors:  Keren Gueta; Ahuvit David; Tsadok Cohen; Yotam Menuchin-Lasowski; Hila Nobel; Ginat Narkis; LiQi Li; Paul Love; Jimmy de Melo; Seth Blackshaw; Heiner Westphal; Ruth Ashery-Padan
Journal:  Development       Date:  2016-10-03       Impact factor: 6.868

9.  LIM domain-binding 1 maintains the terminally differentiated state of pancreatic β cells.

Authors:  Benjamin N Ediger; Hee-Woong Lim; Christine Juliana; David N Groff; LaQueena T Williams; Giselle Dominguez; Jin-Hua Liu; Brandon L Taylor; Erik R Walp; Vasumathi Kameswaran; Juxiang Yang; Chengyang Liu; Chad S Hunter; Klaus H Kaestner; Ali Naji; Changhong Li; Maike Sander; Roland Stein; Lori Sussel; Kyoung-Jae Won; Catherine Lee May; Doris A Stoffers
Journal:  J Clin Invest       Date:  2016-12-12       Impact factor: 14.808

Review 10.  Advances in understanding the mechanisms of erythropoiesis in homeostasis and disease.

Authors:  Raymond Liang; Saghi Ghaffari
Journal:  Br J Haematol       Date:  2016-07-21       Impact factor: 6.998

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