Literature DB >> 10436920

Analysis of Frankia evolutionary radiation using glnII sequences.

B Cournoyer1, C Lavire.   

Abstract

Using a glnII (encoding glutamine synthetase II) PCR selective screening, a Frankia ACN14a gene library clone was isolated. A derived glnII-hybridising 2.7-kb HindIII subclone was characterised. Identities of 95% and 93% were observed, respectively, with the corresponding Frankia CpI1 glnI and glnII regions. A variable segment of the glnII region was selected, PCR amplified from various Frankia genomes, sequenced, and used to investigate phylogenetic relationships within the genus. glnII phylogenetic inferences are well-resolved and allowed us to deduce evolutionary trends among Frankia. Frankia radiation seems to begin with a diversification according to the ability or not to infect actinorhizal plants. The infective strains are divided into two clusters matching plant-colonising specificities.

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Year:  1999        PMID： 10436920     DOI： 10.1111/j.1574-6968.1999.tb13709.x

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN： 0378-1097            Impact factor:   2.742


  20 in total

1.  What stories can the Frankia genomes start to tell us?

Authors:  Louis S Tisa; Nicholas Beauchemin; Maher Gtari; Arnab Sen; Luis G Wall
Journal:  J Biosci       Date:  2013-11       Impact factor: 1.826

2.  16S-23S rRNA intergenic spacer region variability in the genus Frankia.

Authors:  Faten Ghodhbane-Gtari; Imen Nouioui; Mohamed Chair; Abdellatif Boudabous; Maher Gtari
Journal:  Microb Ecol       Date:  2010-02-24       Impact factor: 4.552

3.  Fatty acid and DNA analyses of Permian bacteria isolated from ancient salt crystals reveal differences with their modern relatives.

Authors:  Russell H Vreeland; William D Rosenzweig; Tim Lowenstein; Cindy Satterfield; Antonio Ventosa
Journal:  Extremophiles       Date:  2005-08-30       Impact factor: 2.395

4.  Diversity and specificity of Frankia strains in nodules of sympatric Myrica gale, Alnus incana, and Shepherdia canadensis determined by rrs gene polymorphism.

Authors:  V Huguet; J M Batzli; J F Zimpfer; P Normand; J O Dawson; M P Fernandez
Journal:  Appl Environ Microbiol       Date:  2001-05       Impact factor: 4.792

5.  Selection of unusual actinomycetal primary sigma70 factors by plant-colonizing Frankia strains.

Authors:  Céline Lavire; Didier Blaha; Benoit Cournoyer
Journal:  Appl Environ Microbiol       Date:  2004-02       Impact factor: 4.792

6.  Draft genome sequence of Frankia sp. strain CN3, an atypical, noninfective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis.

Authors:  Faten Ghodhbane-Gtari; Nicholas Beauchemin; David Bruce; Patrick Chain; Amy Chen; Karen Walston Davenport; Shweta Deshpande; Chris Detter; Teal Furnholm; Lynne Goodwin; Maher Gtari; Cliff Han; James Han; Marcel Huntemann; Natalia Ivanova; Nikos Kyrpides; Miriam L Land; Victor Markowitz; Kostas Mavrommatis; Matt Nolan; Imen Nouioui; Ioanna Pagani; Amrita Pati; Sam Pitluck; Catarina L Santos; Arnab Sen; Saubashya Sur; Ernest Szeto; Fernando Tavares; Hazuki Teshima; Subarna Thakur; Luis Wall; Tanja Woyke; Louis S Tisa
Journal:  Genome Announc       Date:  2013-03-14

7.  Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida.

Authors:  Arnab Sen; Nicholas Beauchemin; David Bruce; Patrick Chain; Amy Chen; Karen Walston Davenport; Shweta Deshpande; Chris Detter; Teal Furnholm; Faten Ghodbhane-Gtari; Lynne Goodwin; Maher Gtari; Cliff Han; James Han; Marcel Huntemann; Natalia Ivanova; Nikos Kyrpides; Miriam L Land; Victor Markowitz; Kostas Mavrommatis; Matt Nolan; Imen Nouioui; Ioanna Pagani; Amrita Pati; Sam Pitluck; Catarina L Santos; Saubashya Sur; Ernest Szeto; Fernando Tavares; Hazuki Teshima; Subarna Thakur; Luis Wall; Tanja Woyke; Jessie Wishart; Louis S Tisa
Journal:  Genome Announc       Date:  2013-03-21

8.  Draft Genome Sequence of Frankia sp. Strain BMG5.12, a Nitrogen-Fixing Actinobacterium Isolated from Tunisian Soils.

Authors:  Imen Nouioui; Nicholas Beauchemin; Michael N Cantor; Amy Chen; J Chris Detter; Teal Furnholm; Faten Ghodhbane-Gtari; Lynne Goodwin; Maher Gtari; Cliff Han; James Han; Marcel Huntemann; Susan Xinyu Hua; Natalia Ivanova; Nikos Kyrpides; Victor Markowitz; Kostas Mavrommatis; Natalia Mikhailova; Henrik P Nordberg; Galina Ovchinnikova; Ioanna Pagani; Amrita Pati; Arnab Sen; Saubashya Sur; Ernest Szeto; Subarna Thakur; Luis Wall; Chia-Lin Wei; Tanja Woyke; Louis S Tisa
Journal:  Genome Announc       Date:  2013-07-11

9.  Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina.

Authors:  Louis S Tisa; Nicholas Beauchemin; Michael N Cantor; Teal Furnholm; Faten Ghodhbane-Gtari; Lynne Goodwin; Alex Copeland; Maher Gtari; Marcel Huntemann; Natalia Ivanova; Nikos Kyrpides; Victor Markowitz; Kostas Mavrommatis; Natalia Mikhailova; Imen Nouioui; Rediet Oshone; Galina Ovchinnikova; Ioanna Pagani; Krishnaveni Palaniappan; Amrita Pati; Arnab Sen; Nicole Shapiro; Ernest Szeto; Luis Wall; Jessie Wishart; Tanja Woyke
Journal:  Genome Announc       Date:  2015-08-06

10.  Permanent Draft Genome Sequence of Frankia sp. Strain ACN1ag, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Alnus glutinosa.

Authors:  Erik Swanson; Rediet Oshone; Stephen Simpson; Krystalynne Morris; Feseha Abebe-Akele; W Kelley Thomas; Louis S Tisa
Journal:  Genome Announc       Date:  2015-12-17
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