Literature DB >> 24287551

Structural insights into how 5-hydroxymethylation influences transcription factor binding.

Lukas Lercher1, Michael A McDonough, Afaf H El-Sagheer, Armin Thalhammer, Skirmantas Kriaucionis, Tom Brown, Christopher J Schofield.   

Abstract

Transcription factor binding and high resolution crystallographic studies (1.3 Å) of Dickerson-Drew duplexes with cytosine, methylcytosine and hydroxymethylcytosine bases provide evidence that C-5 cytosine modifications could regulate transcription by context dependent effects on DNA transcription factor interactions.

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Year:  2013        PMID： 24287551     DOI： 10.1039/c3cc48151d

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN： 1359-7345            Impact factor:   6.222


  23 in total

1.  Oxidized Derivatives of 5-Methylcytosine Alter the Stability and Dehybridization Dynamics of Duplex DNA.

Authors:  Paul J Sanstead; Brennan Ashwood; Qing Dai; Chuan He; Andrei Tokmakoff
Journal:  J Phys Chem B       Date:  2020-02-05       Impact factor: 2.991

2.  5-Formylcytosine does not change the global structure of DNA.

Authors:  Jack S Hardwick; Denis Ptchelkine; Afaf H El-Sagheer; Ian Tear; Daniel Singleton; Simon E V Phillips; Andrew N Lane; Tom Brown
Journal:  Nat Struct Mol Biol       Date:  2017-05-15       Impact factor: 15.369

3.  Electron transfer characteristics of 2'-deoxy-2'-fluoro-arabinonucleic acid, a nucleic acid with enhanced chemical stability.

Authors:  Ruijie D Teo; Kiriko Terai; Agostino Migliore; David N Beratan
Journal:  Phys Chem Chem Phys       Date:  2018-09-07       Impact factor: 3.676

4.  Selective recognition of N4-methylcytosine in DNA by engineered transcription-activator-like effectors.

Authors:  Preeti Rathi; Sara Maurer; Daniel Summerer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-05       Impact factor: 6.237

5.  2'-Deoxy-2'-fluoro-arabinonucleic acid: a valid alternative to DNA for biotechnological applications using charge transport.

Authors:  Ruijie D Teo; Elizabeth R Smithwick; Agostino Migliore
Journal:  Phys Chem Chem Phys       Date:  2019-10-24       Impact factor: 3.676

6.  C/EBPβ (CEBPB) protein binding to the C/EBP|CRE DNA 8-mer TTGC|GTCA is inhibited by 5hmC and enhanced by 5mC, 5fC, and 5caC in the CG dinucleotide.

Authors:  Syed Khund Sayeed; Jianfei Zhao; Bangalore K Sathyanarayana; Jaya Prakash Golla; Charles Vinson
Journal:  Biochim Biophys Acta       Date:  2015-03-13

Review 7.  TET proteins in natural and induced differentiation.

Authors:  James P Scott-Browne; Chan-Wang J Lio; Anjana Rao
Journal:  Curr Opin Genet Dev       Date:  2017-09-06       Impact factor: 5.578

8.  Correction to differential stabilities and sequence-dependent base pair opening dynamics of watson-crick base pairs with 5-hydroxymethylcytosine, 5-formylcytosine, or 5-carboxylcytosine.

Authors:  Marta W Szulik; Pradeep S Pallan; Boguslaw Nocek; Markus Voehler; Surajit Banerjee; Sonja Brooks; Andrzej Joachimiak; Martin Egli; Brandt F Eichman; Michael P Stone
Journal:  Biochemistry       Date:  2015-04-10       Impact factor: 3.162

Review 9.  Making the bend: DNA tertiary structure and protein-DNA interactions.

Authors:  Sabrina Harteis; Sabine Schneider
Journal:  Int J Mol Sci       Date:  2014-07-14       Impact factor: 5.923

10.  5-Formylcytosine alters the structure of the DNA double helix.

Authors:  Eun-Ang Raiber; Pierre Murat; Dimitri Y Chirgadze; Dario Beraldi; Ben F Luisi; Shankar Balasubramanian
Journal:  Nat Struct Mol Biol       Date:  2014-12-15       Impact factor: 15.369
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