| Literature DB >> 24285974 |
András Zóka1, Györgyi Műzes, Anikó Somogyi, Tímea Varga, Barbara Szémán, Zahra Al-Aissa, Orsolya Hadarits, Gábor Firneisz.
Abstract
Research in genetics and immunology was going on separate strands for a long time. Type 1 diabetes mellitus might not be characterized with a single pathogenetic factor. It develops when a susceptible individual is exposed to potential triggers in a given sequence and timeframe that eventually disarranges the fine-tuned immune mechanisms that keep autoimmunity under control in health. Genomewide association studies have helped to understand the congenital susceptibility, and hand-in-hand with the immunological research novel paths of immune dysregulation were described in central tolerance, apoptotic pathways, or peripheral tolerance mediated by regulatory T-cells. Epigenetic factors are contributing to the immune dysregulation. The interplay between genetic susceptibility and potential triggers is likely to play a role at a very early age and gradually results in the loss of balanced autotolerance and subsequently in the development of the clinical disease. Genetic susceptibility, the impaired elimination of apoptotic β -cell remnants, altered immune regulatory functions, and environmental factors such as viral infections determine the outcome. Autoreactivity might exist under physiologic conditions and when the integrity of the complex regulatory process is damaged the disease might develop. We summarized the immune regulatory mechanisms that might have a crucial role in disease pathology and development.Entities:
Mesh:
Year: 2013 PMID: 24285974 PMCID: PMC3763577 DOI: 10.1155/2013/254874
Source DB: PubMed Journal: Clin Dev Immunol ISSN: 1740-2522
T1DM-associated non-MHC risk polymorphisms (SNPs) with an odds ratio above 1.4 and the reported/mapped candidate genes in GWAStudies ranked by the highest corresponding odds ratio (OR) values in addition to the candidate genes (CTLA4, IFIH1, IL2, and PTPN2) that due to their immunological functions have been discussed in detail in the text.
| Region | SNPs | Reported gene(s) | Mapped gene | Odds | Risk allele frequency |
| Gene product function [ | Context | Initial sample size | Replication sample size | Platform (SNPs passing QC) | References |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1p13.2 | rs6679677 | PHTF1, PTPN22 | PHTF1-RSBN1 | 1,89 | 0,1 | 1 | PHTF1: transcription factor; RSBN1: not fully characterized | Intergenic | 1,963 cases, 2,938 cntrl | 2997 trios, 4,000 cases, 5,000 cntrl | See [ | [ |
| rs2476601 |
| PTPN22 | NR | NR | 9 |
| Missense | 7,514 cases, 9,045 cntrl | 4,267 cases, 4,670 cntrl, 4,342 trios | Affymetrix and illumina (841,622) (imputed) | [ | |
| 1,8 | 0,09 | 1 | Missense | 467 trios, 561 cases, 1,143 cntrl | 2,350 individuals in 549 families; 390 trios | Illumina (543,071) | [ | |||||
| 1,98 | 0,09 | 2 | Missense | 1,963 cases, 2,938 cntrl | 2997 trios, 4,000 cases, 5,000 cntrl | See [ | [ | |||||
| rs6679677 | PHTF1-RSBN1 | NR | NR | 1 | Intergenic | 3,561 cases, 4,646 cntrl | 6,225 cases, 6,946 cntrl, 3,064 trios | Affymetrix (up to 335,565) | [ | |||
| 1,82 | 0,1 | 5 | Intergenic | 1,963 cases, 2,938 cntrl | See [ | Affymetrix (469,557) | [ | |||||
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| 11p15.5 | rs1004446 | INS | IGF2; IGF2-AS; INS-IGF2 | 1,61 | 0,65 | 4 | Insulin hormone, IGF-2 growth factor | Intron | 467 trios, 561 cases, 1,143 cntrl | 2,350 individuals in 549 families; 390 trios | Illumina (543,071) | [ |
| rs3741208 | IGF2; IGF2-AS; INS-IGF2 | 1,25 | 0,38 | 2 | Intron; ncRNA | 1,963 cases, 2,938 cntrl | 2997 trios, 4,000 cases, 5,000 cntrl | See [ | [ | |||
| rs7111341 | MIR4686-ASCL2 | NR | NR | 4 | MIR4686: micro-RNA; ASCL2: a helix-loop-helix transcription factor involved in the determination of the neuronal precursors in the central and peripheral nervous system | Intergenic | 7,514 cases, 9,045 cntrl | 4,267 cases, 4,670 cntrl, 4,342 trios | Affymetrix and illumina (841,622) (imputed) | [ | ||
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| 10p15.1 | rs61839660 | IL2RA | IL2RA | 1,6 | NR | 5 | IL2RA: as homodimer, a low-affinity receptor of IL-2; RPL32P23: pseudogene; RBM17: an RNA-binding protein, part of the spliceosome complex | Intron | 16,179 Eu individuals | NR | NR (6,233,112) (imputed) | [ |
| rs12251307 | RPL32P23-RBM17 | NR | NR | 1 | Intergenic | 7,514 cases, 9,045 cntrl | 4,267 cases, 4,670 cntrl, 4,342 trios | Affymetrix and illumina (841,622) (imputed) | [ | |||
| NR | NR | 2 | Intergenic | 3,561 cases, 4,646 cntrl | 6,225 cases,6,946 cntrl, 3,064 trios | Affymetrix (up to 335,565) | [ | |||||
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| 12p13.31 | rs3764021 | NR | CLEC2D | 1,57 | 0,47 | 5 | C-type lectin, a member of the natural killer cell receptor family, inhibits osteoclast formation | Cds-synon | 1,963 cases, 2,938 cntrl | See [ | Affymetrix (469,557) | [ |
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| 16p13.13 | rs2903692 | KIAA0350 | CLEC16A | 1,54 | 0,62 | 7 | Member of the C-type lectin domain containing family | Intron | 467 trios, 561 cases, 1,143 cntrl | 2,350 individuals in 549 families; 390 trios | Illumina (543,071) | [ |
| rs12708716 | 1,19 | 0,65 | 5 | Intron | 1,963 cases, 2,938 cntrl | See [ | Affymetrix (469,557) | [ | ||||
| 1,23 | 0,68 | 3 | Intron | 1,963 cases, 2,938 cntrl | 2997 trios, 4,000 cases, 5,000 cntrl | See [ | [ | |||||
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| 12p13.31 | rs11052552 | NR | NPM1P7-CLECL1 | 1,49 | 0,49 | 7 | NPM1P7: pseudogene CLECL1: transmembrane, C-type lectin-like protein highly expressed on dendritic and B cells, may act as a T-cell costimulatory molecule | Intergenic | 1,963 cases, 2,938 cntrl | See [ | Affymetrix (469,557) | [ |
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| 12q24.12 | rs1265564 | CUX2 | CUX2 | 1,45 | NR | 1 | A protein that contains three CUT domains and a homeodomain; both domains are DNA-binding motifs | Intron | 16,179 eu individuals | NR | NR (6,233,112) (imputed) | [ |
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| 13q22.2 | rs539514 | LMO7 | LMO7 | 1,43 | 0,5 | 6 | May be involved in protein-protein interactions | Intron | 9,934 eu cases, 16,956 eu cntrl | 1,120 eu affected trios | Affymetrix and illumina (~2.54 million) (imputed) | [ |
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| 2q33.2 | rs3087243 | CTLA4 | CTLA4 | NR | NR | 1 | Transmits an inhibitory signal to T-cells | NearGene-3 | 7,514 cases, 9,045 cntrl | 4,267 cases, 4,670 cntrl, 4,342 trios | Affymetrix and illumina (841,622) (imputed) | [ |
| NR | NR | 8 | NearGene-3 | 3,561 cases, 4,646 cntrl | 6,225 cases, 6,946 cntrl, 3,064 trios | Affymetrix (up to 335,565) | [ | |||||
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| 2q24.2 | rs1990760 | IFIH1 | IFIH1 | NR | NR | 7 | Acts as a cytoplasmic sensor of viral nucleic acids | Missense | 7,514 cases, 9,045 controls | 4,267 cases, 4,670 controls, 4,342 trios | Affymetrix and illumina (841,622) (imputed) | [ |
| 1,18 | 0,6 | 2 | Missense | 1,963 cases, 2,938 controls | 2997 trios, 4,000 cases, 5,000 controls | See [ | [ | |||||
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| 4q27 | rs4505848 | IL2 | KIAA1109 | NR | NR | 5 | KIAA1109: thought to function in the regulation of epithelial growth and differentiation and in tumor development | Intron | 7,514 cases, 9,045 cntrl | 4,267 cases, 4,670 cntrl, 4,342 trios | Affymetrix and illumina (841,622) (imputed) | [ |
| rs2069762 | IL2 | IL2 | 0,889 | NR | NR | Cytokine, key activator of T-cells | Intron | 8506 T1DM samples | Affymetrix and illumina (841,622) (imputed) | [ | ||
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| 18p11.21 | rs1893217 | PTPN2 | PTPN2 | NR | NR | 4 | Member of the protein tyrosine phosphatase (PTP) family. Reported to have inhibitory role in beta-cell apoptosis | Intron | 7,514 cases, 9,045 cntrl | 4,267 cases, 4,670 cntrl, 4,342 trios | Affymetrix and illumina (841,622) (imputed) | [ |
| rs2542151 | PSMG2-PTPN2 | NR | NR | 9 | PSMG2: proteasome assembly chaperone | Intergenic | 3,561 cases, 4,646 cntrl | 6,225 cases, 6,946 cntrl, 3,064 trios | Affymetrix (up to 335,565) | [ | ||
| 1,3 | 0,16 | 1 | Intergenic | 1,963 cases, 2,938 cntrl | 2997 trios, 4,000 cases, 5,000 cntrl | See [ | [ | |||||
Figure 1In addition to proinflammatory cytokines such as IL-1 and IFN-γ, the signaling via IFIH1 and various other pathogen recognition receptors mediate β-cell apoptotic death: upregulate certain BH3 proteins and also promote the secretion of numerous chemokines. Certain BH3 “sensitizer” proteins, for example, DP5, bind to BCL2 and BCL-XL which inhibit BAX and BAK activation and at the same time liberate the “activator” proteins (such as BIM and PUMA). PTPN2 is a negative regulator of the pancreatic β-cell apoptosis that reduces the BH3 protein-related apoptotic activation cascade in the β-cell.