Literature DB >> 2428015

Vacuum ultraviolet circular dichroism as an indicator of helical handedness in nucleic acids.

A L Williams, C Cheong, I Tinoco, L B Clark.   

Abstract

Calculated circular dichroism spectra are presented for double-stranded polynucleotides of regular sequences in A-RNA, A-DNA, B-DNA, and Z-DNA conformations. Quantum mechanical matrix method calculations were carried out in the near and vacuum ultraviolet regions. In the near UV, the calculated spectra agreed qualitatively with the measured spectra. However in the far and vacuum UV, the calculated CD compared nearly quantitatively with the experimental spectra. The calculations show that the sign of the CD in the vacuum UV, in contrast to that in the near UV, can be correlated with the handedness of the helix.

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Year:  1986        PMID: 2428015      PMCID: PMC311671          DOI: 10.1093/nar/14.16.6649

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

1.  Evidence for Z-form RNA by vacuum UV circular dichroism.

Authors:  J H Riazance; W A Baase; W C Johnson; K Hall; P Cruz; I Tinoco
Journal:  Nucleic Acids Res       Date:  1985-07-11       Impact factor: 16.971

2.  Electronic spectra of crystalline 9-ethylguanine and guanine hydrochloride.

Authors:  L B Clark
Journal:  J Am Chem Soc       Date:  1977-06-08       Impact factor: 15.419

3.  Conformation and circular dichroism of DNA.

Authors:  C A Sprecher; W A Baase; W C Johnson
Journal:  Biopolymers       Date:  1979-04       Impact factor: 2.505

4.  Optimised parameters for RNA double-helices.

Authors:  S Arnott; D W Hukins; S D Dover
Journal:  Biochem Biophys Res Commun       Date:  1972-09-26       Impact factor: 3.575

5.  Optical activity of polypeptides and proteins.

Authors:  V Madison; J Schellman
Journal:  Biopolymers       Date:  1972       Impact factor: 2.505

6.  Salt-induced co-operative conformational change of a synthetic DNA: equilibrium and kinetic studies with poly (dG-dC).

Authors:  F M Pohl; T M Jovin
Journal:  J Mol Biol       Date:  1972-06-28       Impact factor: 5.469

7.  Polarized single-crystal absorption spectrum of 1-methyluracil.

Authors:  W A Eaton; T P Lewis
Journal:  J Chem Phys       Date:  1970-09-15       Impact factor: 3.488

8.  Circular dichroism of adenine and thymine containing synthetic polynucleotides.

Authors:  J Greve; M F Maestre; A Levin
Journal:  Biopolymers       Date:  1977-07       Impact factor: 2.505

9.  The analysis of circular dichroism spectra of natural DNAs using spectral components from synthetic DNAs.

Authors:  D M Gray; F D Hamilton; M R Vaughan
Journal:  Biopolymers       Date:  1978-01       Impact factor: 2.505

10.  Polarized absorption spectra of purines and pyrimidines.

Authors:  R F Stewart; N Davidson
Journal:  J Chem Phys       Date:  1963-07-15       Impact factor: 3.488

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  9 in total

1.  The vacuum UV CD spectra of G.G.C triplexes.

Authors:  K H Johnson; R H Durland; M E Hogan
Journal:  Nucleic Acids Res       Date:  1992-08-11       Impact factor: 16.971

2.  The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation.

Authors:  Mika A Kastenholz; Thomas U Schwartz; Philippe H Hünenberger
Journal:  Biophys J       Date:  2006-10-15       Impact factor: 4.033

3.  Stabilization of the Z' form of poly(dGdC):poly(dGdC) in solution by multivalent ions relates to the ZII form in crystals.

Authors:  M E Harder; W C Johnson
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

4.  Local DNA Base Conformations and Ligand Intercalation in DNA Constructs Containing Optical Probes.

Authors:  Huiying Ji; Neil P Johnson; Peter H von Hippel; Andrew H Marcus
Journal:  Biophys J       Date:  2019-08-12       Impact factor: 4.033

5.  Synonymous nucleotide modification of the KCNH2 gene affects both mRNA characteristics and translation of the encoded hERG ion channel.

Authors:  Alexander C Bertalovitz; Marika L Osterbur Badhey; Thomas V McDonald
Journal:  J Biol Chem       Date:  2018-06-15       Impact factor: 5.157

6.  Helical nature of poly(dI-dC).poly(dI-dC). Vibrational circular dichroism results.

Authors:  L Wang; T A Keiderling
Journal:  Nucleic Acids Res       Date:  1993-08-25       Impact factor: 16.971

Review 7.  Applications of synchrotron-based spectroscopic techniques in studying nucleic acids and nucleic acid-functionalized nanomaterials.

Authors:  Peiwen Wu; Yang Yu; Claire E McGhee; Li Huey Tan; Yi Lu
Journal:  Adv Mater       Date:  2014-09-10       Impact factor: 30.849

8.  Dinucleotides as simple models of the base stacking-unstacking component of DNA 'breathing' mechanisms.

Authors:  Eric R Beyerle; Mohammadhasan Dinpajooh; Huiying Ji; Peter H von Hippel; Andrew H Marcus; Marina G Guenza
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

9.  Isotope effect on the circular dichroism spectrum of methyl α-D-glucopyranoside in aqueous solution.

Authors:  Yusuke Kanematsu; Yukiko Kamiya; Koichi Matsuo; Kunihiko Gekko; Koichi Kato; Masanori Tachikawa
Journal:  Sci Rep       Date:  2015-12-14       Impact factor: 4.379

  9 in total

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