Literature DB >> 24279917

Impact of next generation sequencing on diagnostics in a genetic skin disease clinic.

Takuya Takeichi1, Arti Nanda, Lu Liu, Amr Salam, Patrick Campbell, Kenneth Fong, Masashi Akiyama, Linda Ozoemena, Kristina L Stone, Hejab Al-Ajmi, Michael A Simpson, John A McGrath.   

Abstract

Individuals with inherited skin diseases often pose one of the most difficult diagnostic challenges in dermatology. The hunt for the underlying molecular pathology may involve candidate gene screening or linkage analysis, which is usually determined by the initial history, the physical findings and laboratory tests. Recent technical advances in DNA sequencing, however, are shifting the diagnostic paradigm. Notably, next-generation sequencing allows a more comprehensive approach to diagnosing inherited diseases, with potential savings of both time and money. In the setting of a paediatric dermatology genetics clinic in Kuwait, we therefore performed whole-exome sequencing on seven individuals without a priori detailed knowledge of the patients' disorders: from these sequencing data, we diagnosed X-linked hypohidrotic ectodermal dysplasia (two cases), acrodermatitis enteropathica, recessive erythropoietic protoporphyria (two siblings) and localized recessive dystrophic epidermolysis bullosa (two siblings). All these groups of disorders are clinically and genetically heterogeneous, but the sequencing data proved inherently useful in improving patient care and avoiding unnecessary investigations. Our observations highlight the value of whole-exome sequencing, in combination with robust bioinformatics analysis, in determining the precise molecular pathology and clinical diagnosis in patients with genetic skin disorders, notably at an early stage in the clinical evaluation of these often complex disorders and thereby support a new paradigm for future diagnostics.
© 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  acrodermatitis enteropathica; epidermolysis bullosa; erythropoietic protoporphyria; genodermatosis; hypohidrotic ectodermal dysplasia; mutation; whole-exome sequencing

Mesh:

Year:  2013        PMID: 24279917     DOI: 10.1111/exd.12276

Source DB:  PubMed          Journal:  Exp Dermatol        ISSN: 0906-6705            Impact factor:   3.960


  10 in total

1.  Clinical utility gene card for: acrodermatitis enteropathica - update 2015.

Authors:  Sébastien Küry; Monia Kharfi; Eric Blouin; Sébastien Schmitt; Stéphane Bézieau
Journal:  Eur J Hum Genet       Date:  2015-10-07       Impact factor: 4.246

2.  Next-generation sequencing for mutation detection in heritable skin diseases: the paradigm of pseudoxanthoma elasticum.

Authors:  Andrew P South; Qiaoli Li; Jouni Uitto
Journal:  J Invest Dermatol       Date:  2015-04       Impact factor: 8.551

Review 3.  [Possibilities and limitations of molecular pathology in dermatohistology].

Authors:  V Schacht; U Lehmann; T Reineke-Plaass; F Länger; B Auber; S Morlot; H-H Kreipe
Journal:  Hautarzt       Date:  2018-07       Impact factor: 0.751

Review 4.  Dystrophic epidermolysis bullosa: a review.

Authors:  Satoru Shinkuma
Journal:  Clin Cosmet Investig Dermatol       Date:  2015-05-26

5.  Novel and recurrent ATP2A2 mutations in Japanese patients with Darier's disease.

Authors:  Kana Noda; Takuya Takeichi; Yusuke Okuno; Hiromichi Takama; Shunsuke Miura; Shinji Kagami; Haruko Hino; Yuki Nakamura; Yumi Fujio; Izumi Konohana; Ayako Otani; Hideki Mukai; Kazumitsu Sugiura; Masashi Akiyama
Journal:  Nagoya J Med Sci       Date:  2016-12       Impact factor: 1.131

Review 6.  Clinical Application of Genome and Exome Sequencing as a Diagnostic Tool for Pediatric Patients: a Scoping Review of the Literature.

Authors:  Hadley Stevens Smith; J Michael Swint; Seema R Lalani; Jose-Miguel Yamal; Marcia C de Oliveira Otto; Stephan Castellanos; Amy Taylor; Brendan H Lee; Heidi V Russell
Journal:  Genet Med       Date:  2018-05-14       Impact factor: 8.822

7.  Your DNA, Your Say.

Authors:  Anna Middleton
Journal:  New Bioeth       Date:  2017-04

8.  A multiplex real-time PCR panel assay for simultaneous detection and differentiation of 12 common swine viruses.

Authors:  Xiju Shi; Xuming Liu; Qin Wang; Amaresh Das; Guiping Ma; Lu Xu; Qing Sun; Lalitha Peddireddi; Wei Jia; Yanhua Liu; Gary Anderson; Jianfa Bai; Jishu Shi
Journal:  J Virol Methods       Date:  2016-08-06       Impact factor: 2.014

9.  Clinical features and genetic analysis of two Chinese families with X-linked ichthyosis.

Authors:  Wanqin Xie; Haiyan Zhou; Lin Zhou; Yun Gong; Jiwu Lin; Yong Chen
Journal:  J Int Med Res       Date:  2020-10       Impact factor: 1.671

10.  Prevalence of monogenic disease in paediatric patients with a predominant respiratory phenotype.

Authors:  Dan Dai; Mei Mei; Liyuan Hu; Yun Cao; Xiaochuan Wang; Libo Wang; Yulan Lu; Lin Yang; Xinran Dong; Huijun Wang; Bingbing Wu; Liling Qian
Journal:  Arch Dis Child       Date:  2021-06-16       Impact factor: 3.791

  10 in total

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