Literature DB >> 24274754

RNase III: Genetics and function; structure and mechanism.

Donald L Court1, Jianhua Gan, Yu-He Liang, Gary X Shaw, Joseph E Tropea, Nina Costantino, David S Waugh, Xinhua Ji.   

Abstract

RNase III is a global regulator of gene expression in Escherichia coli that is instrumental in the maturation of ribosomal and other structural RNAs. We examine here how RNase III itself is regulated in response to growth and other environmental changes encountered by the cell and how, by binding or processing double-stranded RNA (dsRNA) intermediates, RNase III controls the expression of genes. Recent insight into the mechanism of dsRNA binding and processing, gained from structural studies of RNase III, is reviewed. Structural studies also reveal new cleavage sites in the enzyme that can generate longer 3' overhangs.

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Year:  2013        PMID: 24274754      PMCID: PMC6311387          DOI: 10.1146/annurev-genet-110711-155618

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  119 in total

1.  Crystal structure of ERA: a GTPase-dependent cell cycle regulator containing an RNA binding motif.

Authors:  X Chen; D L Court; X Ji
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-20       Impact factor: 11.205

Review 2.  Messenger RNA stability and its role in control of gene expression in bacteria and phages.

Authors:  M Grunberg-Manago
Journal:  Annu Rev Genet       Date:  1999       Impact factor: 16.830

Review 3.  Gene silencing by double-stranded RNA.

Authors:  R W Carthew
Journal:  Curr Opin Cell Biol       Date:  2001-04       Impact factor: 8.382

4.  Era GTPase of Escherichia coli: binding to 16S rRNA and modulation of GTPase activity by RNA and carbohydrates.

Authors:  Timothy I Meier; Robert B Peery; Kelly A McAllister; Genshi Zhao
Journal:  Microbiology       Date:  2000-05       Impact factor: 2.777

5.  Role for a bidentate ribonuclease in the initiation step of RNA interference.

Authors:  E Bernstein; A A Caudy; S M Hammond; G J Hannon
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

6.  Escherichia coli ribosomal ribonucleic acids are not cut from an intact precursor molecule.

Authors:  P Gegenheimer; D Apirion
Journal:  J Biol Chem       Date:  1975-03-25       Impact factor: 5.157

7.  A novel type of RNase III family proteins in eukaryotes.

Authors:  V Filippov; V Solovyev; M Filippova; S S Gill
Journal:  Gene       Date:  2000-03-07       Impact factor: 3.688

8.  Ribonuclease III processing of coaxially stacked RNA helices.

Authors:  T Franch; T Thisted; K Gerdes
Journal:  J Biol Chem       Date:  1999-09-10       Impact factor: 5.157

9.  Human RNase III is a 160-kDa protein involved in preribosomal RNA processing.

Authors:  H Wu; H Xu; L J Miraglia; S T Crooke
Journal:  J Biol Chem       Date:  2000-11-24       Impact factor: 5.157

Review 10.  Function, mechanism and regulation of bacterial ribonucleases.

Authors:  A W Nicholson
Journal:  FEMS Microbiol Rev       Date:  1999-06       Impact factor: 16.408

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  73 in total

1.  Arabidopsis chloroplast mini-ribonuclease III participates in rRNA maturation and intron recycling.

Authors:  Amber M Hotto; Benoît Castandet; Laetitia Gilet; Andrea Higdon; Ciarán Condon; David B Stern
Journal:  Plant Cell       Date:  2015-02-27       Impact factor: 11.277

2.  Stability of the osmoregulated promoter-derived proP mRNA is posttranscriptionally regulated by RNase III in Escherichia coli.

Authors:  Boram Lim; Kangseok Lee
Journal:  J Bacteriol       Date:  2015-02-02       Impact factor: 3.490

Review 3.  Trans-acting regulators of ribonuclease activity.

Authors:  Jaejin Lee; Minho Lee; Kangseok Lee
Journal:  J Microbiol       Date:  2021-02-10       Impact factor: 3.422

4.  Systematic prediction of genes functionally linked to CRISPR-Cas systems by gene neighborhood analysis.

Authors:  Sergey A Shmakov; Kira S Makarova; Yuri I Wolf; Konstantin V Severinov; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-21       Impact factor: 11.205

5.  The Ambystoma tigrinum virus (ATV) RNase III gene can modulate host PKR activation and interferon production.

Authors:  Alexander G Allen; Scott Morgans; Eric Smith; Mariah M Aron; James K Jancovich
Journal:  Virology       Date:  2017-08-23       Impact factor: 3.616

6.  Mapping the Universe of RNA Tetraloop Folds.

Authors:  Sandro Bottaro; Kresten Lindorff-Larsen
Journal:  Biophys J       Date:  2017-06-30       Impact factor: 4.033

7.  Mechanism for coordinate regulation of rpoS by sRNA-sRNA interaction in Escherichia coli.

Authors:  Wonkyong Kim; Younghoon Lee
Journal:  RNA Biol       Date:  2019-09-29       Impact factor: 4.652

8.  Transcript decay mediated by RNase III in Borrelia burgdorferi.

Authors:  Santina Snow; Emily Bacon; Jennifer Bergeron; David Katzman; Amelia Wilhelm; Owen Lewis; Deepsing Syangtan; Andrew Calkins; Linda Archambault; Melissa L Anacker; Paula Jean Schlax
Journal:  Biochem Biophys Res Commun       Date:  2020-07-01       Impact factor: 3.575

9.  Structural Principles of CRISPR RNA Processing.

Authors:  Hong Li
Journal:  Structure       Date:  2014-11-26       Impact factor: 5.006

Review 10.  Regulation of Escherichia coli RNase III activity.

Authors:  Boram Lim; Minji Sim; Howoon Lee; Seogang Hyun; Younghoon Lee; Yoonsoo Hahn; Eunkyoung Shin; Kangseok Lee
Journal:  J Microbiol       Date:  2015-07-31       Impact factor: 3.422

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