Literature DB >> 24274060

Inhibiting AMPylation: a novel screen to identify the first small molecule inhibitors of protein AMPylation.

Daniel M Lewallen1, Anju Sreelatha, Venkatasubramanian Dharmarajan, Franck Madoux, Peter Chase, Patrick R Griffin, Kim Orth, Peter Hodder, Paul R Thompson.   

Abstract

Enzymatic transfer of the AMP portion of ATP to substrate proteins has recently been described as an essential mechanism of bacterial infection for several pathogens. The first AMPylator to be discovered, VopS from Vibrio parahemolyticus, catalyzes the transfer of AMP onto the host GTPases Cdc42 and Rac1. Modification of these proteins disrupts downstream signaling events, contributing to cell rounding and apoptosis, and recent studies have suggested that blocking AMPylation may be an effective route to stop infection. To date, however, no small molecule inhibitors have been discovered for any of the AMPylators. Therefore, we developed a fluorescence-polarization-based high-throughput screening assay and used it to discover the first inhibitors of protein AMPylation. Herein we report the discovery of the first small molecule VopS inhibitors (e.g., calmidazolium, GW7647, and MK886) with Ki's ranging from 6 to 50 μM and upward of 30-fold selectivity versus HYPE, the only known human AMPylator.

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Year:  2013        PMID: 24274060      PMCID: PMC3944102          DOI: 10.1021/cb4006886

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  29 in total

1.  Kinetic and structural insights into the mechanism of AMPylation by VopS Fic domain.

Authors:  Phi Luong; Lisa N Kinch; Chad A Brautigam; Nick V Grishin; Diana R Tomchick; Kim Orth
Journal:  J Biol Chem       Date:  2010-04-21       Impact factor: 5.157

2.  Characterization of a rabbit polyclonal antibody against threonine-AMPylation.

Authors:  Yi-Heng Hao; Trinette Chuang; Haydn L Ball; Phi Luong; Yan Li; Ruben D Flores-Saaib; Kim Orth
Journal:  J Biotechnol       Date:  2010-12-23       Impact factor: 3.307

Review 3.  Activity-based protein profiling: from enzyme chemistry to proteomic chemistry.

Authors:  Benjamin F Cravatt; Aaron T Wright; John W Kozarich
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

4.  The Legionella effector protein DrrA AMPylates the membrane traffic regulator Rab1b.

Authors:  Matthias P Müller; Heide Peters; Julia Blümer; Wulf Blankenfeldt; Roger S Goody; Aymelt Itzen
Journal:  Science       Date:  2010-07-22       Impact factor: 47.728

5.  Structural basis of Fic-mediated adenylylation.

Authors:  Junyu Xiao; Carolyn A Worby; Seema Mattoo; Banumathi Sankaran; Jack E Dixon
Journal:  Nat Struct Mol Biol       Date:  2010-07-11       Impact factor: 15.369

6.  A fluopol-ABPP HTS assay to identify PAD inhibitors.

Authors:  Bryan Knuckley; Justin E Jones; Daniel A Bachovchin; Jessica Slack; Corey P Causey; Steven J Brown; Hugh Rosen; Benjamin F Cravatt; Paul R Thompson
Journal:  Chem Commun (Camb)       Date:  2010-08-25       Impact factor: 6.222

7.  Protection of mice against H. somni septicemia by vaccination with recombinant immunoglobulin binding protein subunits.

Authors:  Roger S Geertsema; Carolyn Worby; Robert P Kruger; Yuichi Tagawa; Riccardo Russo; D Scott Herdman; Kimby Lo; Richard A Kimball; Jack Dixon; Lynette B Corbeil
Journal:  Vaccine       Date:  2008-06-30       Impact factor: 3.641

8.  The fic domain: regulation of cell signaling by adenylylation.

Authors:  Carolyn A Worby; Seema Mattoo; Robert P Kruger; Lynette B Corbeil; Antonius Koller; Juan C Mendez; Bereket Zekarias; Cheri Lazar; Jack E Dixon
Journal:  Mol Cell       Date:  2009-04-10       Impact factor: 17.970

9.  Foodborne illness acquired in the United States--major pathogens.

Authors:  Elaine Scallan; Robert M Hoekstra; Frederick J Angulo; Robert V Tauxe; Marc-Alain Widdowson; Sharon L Roy; Jeffery L Jones; Patricia M Griffin
Journal:  Emerg Infect Dis       Date:  2011-01       Impact factor: 6.883

10.  Fido, a novel AMPylation domain common to fic, doc, and AvrB.

Authors:  Lisa N Kinch; Melanie L Yarbrough; Kim Orth; Nick V Grishin
Journal:  PLoS One       Date:  2009-06-05       Impact factor: 3.240

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  11 in total

1.  HypE-specific nanobodies as tools to modulate HypE-mediated target AMPylation.

Authors:  Matthias C Truttmann; Qin Wu; Sarah Stiegeler; Joao N Duarte; Jessica Ingram; Hidde L Ploegh
Journal:  J Biol Chem       Date:  2015-02-12       Impact factor: 5.157

Review 2.  Enzymes Involved in AMPylation and deAMPylation.

Authors:  Amanda K Casey; Kim Orth
Journal:  Chem Rev       Date:  2017-08-18       Impact factor: 60.622

3.  High-throughput identification of proteins with AMPylation using self-assembled human protein (NAPPA) microarrays.

Authors:  Xiaobo Yu; Joshua LaBaer
Journal:  Nat Protoc       Date:  2015-04-16       Impact factor: 13.491

Review 4.  Chemical reporters for exploring ADP-ribosylation and AMPylation at the host-pathogen interface.

Authors:  Nathan P Westcott; Howard C Hang
Journal:  Curr Opin Chem Biol       Date:  2014-12       Impact factor: 8.822

5.  A novel link between Fic (filamentation induced by cAMP)-mediated adenylylation/AMPylation and the unfolded protein response.

Authors:  Anwesha Sanyal; Andy J Chen; Ernesto S Nakayasu; Cheri S Lazar; Erica A Zbornik; Carolyn A Worby; Antonius Koller; Seema Mattoo
Journal:  J Biol Chem       Date:  2015-01-19       Impact factor: 5.157

Review 6.  HDX-MS guided drug discovery: small molecules and biopharmaceuticals.

Authors:  David P Marciano; Venkatasubramanian Dharmarajan; Patrick R Griffin
Journal:  Curr Opin Struct Biol       Date:  2014-08-30       Impact factor: 6.809

7.  Global Profiling of Huntingtin-associated protein E (HYPE)-Mediated AMPylation through a Chemical Proteomic Approach.

Authors:  Malgorzata Broncel; Remigiusz A Serwa; Tom D Bunney; Matilda Katan; Edward W Tate
Journal:  Mol Cell Proteomics       Date:  2015-11-24       Impact factor: 5.911

Review 8.  Bacterial virulence mediated by orthogonal post-translational modification.

Authors:  Kaitlin A Chambers; Rebecca A Scheck
Journal:  Nat Chem Biol       Date:  2020-09-17       Impact factor: 15.040

9.  Crystal structure of the human, FIC-domain containing protein HYPE and implications for its functions.

Authors:  Tom D Bunney; Ambrose R Cole; Malgorzata Broncel; Diego Esposito; Edward W Tate; Matilda Katan
Journal:  Structure       Date:  2014-12-02       Impact factor: 5.006

10.  DNA-Catalyzed Introduction of Azide at Tyrosine for Peptide Modification.

Authors:  Puzhou Wang; Scott K Silverman
Journal:  Angew Chem Int Ed Engl       Date:  2016-07-08       Impact factor: 15.336

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