Literature DB >> 24272858

Closing the (nuclear) envelope on the genome: how nuclear lamins interact with promoters and modulate gene expression.

Philippe Collas1, Eivind G Lund, Anja R Oldenburg.   

Abstract

The nuclear envelope shapes the functional organization of the nucleus. Increasing evidence indicates that one of its main components, the nuclear lamina, dynamically interacts with the genome, including the promoter region of specific genes. This seems to occur in a manner that accords developmental significance to these interactions. This essay addresses key issues raised by recent data on the association of nuclear lamins with the genome. We discuss how lamins interact with large chromatin domains and with spatially restricted regions on gene promoters. We address the relationship between these interactions, chromatin modifications and gene expression outcomes. Lamin-genome contacts are redistributed after cell division and during stem cell differentiation, with evidence of lineage specificity. Thus, we also speculate on a developmental role of lamin interactions with specific genes. Finally, we highlight how concepts arising from this recent work lay the foundations of future challenges and investigations.
© 2014 WILEY Periodicals, Inc.

Entities:  

Keywords:  adipose stem cell; chromatin; differentiation; gene expression; lamina associated domain; nuclear lamin; promoter

Mesh:

Substances:

Year:  2013        PMID: 24272858     DOI: 10.1002/bies.201300138

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  27 in total

1.  Nuclear lamins: making contacts with promoters.

Authors:  Eivind Lund; Philippe Collas
Journal:  Nucleus       Date:  2013-11-08       Impact factor: 4.197

Review 2.  Nanoscale invaginations of the nuclear envelope: Shedding new light on wormholes with elusive function.

Authors:  Ingmar Schoen; Lina Aires; Jonas Ries; Viola Vogel
Journal:  Nucleus       Date:  2017-07-07       Impact factor: 4.197

3.  Computational 3D genome modeling using Chrom3D.

Authors:  Jonas Paulsen; Tharvesh Moideen Liyakat Ali; Philippe Collas
Journal:  Nat Protoc       Date:  2018-04-26       Impact factor: 13.491

4.  Knockdown of formin mDia2 alters lamin B1 levels and increases osteogenesis in stem cells.

Authors:  Jeyantt S Sankaran; Buer Sen; Amel Dudakovic; Christopher R Paradise; Tony Perdue; Zhihui Xie; Cody McGrath; Maya Styner; Joshua Newberg; Gunes Uzer; Andre J van Wijnen; Janet Rubin
Journal:  Stem Cells       Date:  2019-11-06       Impact factor: 6.277

5.  Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations.

Authors:  Eivind Lund; Anja R Oldenburg; Philippe Collas
Journal:  Nucleic Acids Res       Date:  2014-04-29       Impact factor: 16.971

6.  Distinct features of lamin A-interacting chromatin domains mapped by ChIP-sequencing from sonicated or micrococcal nuclease-digested chromatin.

Authors:  Eivind G Lund; Isabelle Duband-Goulet; Anja Oldenburg; Brigitte Buendia; Philippe Collas
Journal:  Nucleus       Date:  2015       Impact factor: 4.197

7.  Biosynthesis of O-N-acetylgalactosamine glycans in the human cell nucleus.

Authors:  Romina B Cejas; Virginia Lorenz; Yohana C Garay; Fernando J Irazoqui
Journal:  J Biol Chem       Date:  2018-12-27       Impact factor: 5.157

Review 8.  Lamins at the crossroads of mechanosignaling.

Authors:  Selma Osmanagic-Myers; Thomas Dechat; Roland Foisner
Journal:  Genes Dev       Date:  2015-02-01       Impact factor: 11.361

Review 9.  Specifying peripheral heterochromatin during nuclear lamina reassembly.

Authors:  Andrey Poleshko; Richard A Katz
Journal:  Nucleus       Date:  2014-02-10       Impact factor: 4.197

10.  Re-engineering cellular physiology by rewiring high-level global regulatory genes.

Authors:  Stephen Fitzgerald; Shane C Dillon; Tzu-Chiao Chao; Heather L Wiencko; Karsten Hokamp; Andrew D S Cameron; Charles J Dorman
Journal:  Sci Rep       Date:  2015-12-03       Impact factor: 4.379

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