Literature DB >> 24271089

Genomics-enabled discovery of phosphonate natural products and their biosynthetic pathways.

Kou-San Ju1, James R Doroghazi, William W Metcalf.   

Abstract

Phosphonate natural products have proven to be a rich source of useful pharmaceutical, agricultural, and biotechnology products, whereas study of their biosynthetic pathways has revealed numerous intriguing enzymes that catalyze unprecedented biochemistry. Here we review the history of phosphonate natural product discovery, highlighting technological advances that have played a key role in the recent advances in their discovery. Central to these developments has been the application of genomics, which allowed discovery and development of a global phosphonate metabolic framework to guide research efforts. This framework suggests that the future of phosphonate natural products remains bright, with many new compounds and pathways yet to be discovered.

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Year:  2013        PMID: 24271089      PMCID: PMC3946943          DOI: 10.1007/s10295-013-1375-2

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  51 in total

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Journal:  J Antibiot (Tokyo)       Date:  1988-06       Impact factor: 2.649

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Journal:  J Antibiot (Tokyo)       Date:  1984-09       Impact factor: 2.649

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Journal:  J Antibiot (Tokyo)       Date:  1984-08       Impact factor: 2.649

5.  Different biosynthetic pathways to fosfomycin in Pseudomonas syringae and Streptomyces species.

Authors:  Seung Young Kim; Kou-San Ju; William W Metcalf; Bradley S Evans; Tomohisa Kuzuyama; Wilfred A van der Donk
Journal:  Antimicrob Agents Chemother       Date:  2012-05-21       Impact factor: 5.191

6.  K-26, a novel inhibitor of angiotensin I converting enzyme produced by an actinomycete K-26.

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Journal:  J Antibiot (Tokyo)       Date:  1986-01       Impact factor: 2.649

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Journal:  J Antibiot (Tokyo)       Date:  1980-01       Impact factor: 2.649

8.  Fosfonochlorin, a new antibiotic with spheroplast forming activity.

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Journal:  J Antibiot (Tokyo)       Date:  1989-02       Impact factor: 2.649

9.  Cloning of a phosphinothricin N-acetyltransferase gene from Streptomyces viridochromogenes Tü494 and its expression in Streptomyces lividans and Escherichia coli.

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Journal:  Gene       Date:  1988       Impact factor: 3.688

10.  Cyanohydrin phosphonate natural product from Streptomyces regensis.

Authors:  Joel P Cioni; James R Doroghazi; Kou-San Ju; Xiaomin Yu; Bradley S Evans; Jaeheon Lee; William W Metcalf
Journal:  J Nat Prod       Date:  2014-01-17       Impact factor: 4.050

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  13 in total

1.  Valinophos Reveals a New Route in Microbial Phosphonate Biosynthesis That Is Broadly Conserved in Nature.

Authors:  Yeying Zhang; Li Chen; Jake A Wilson; Jerry Cui; Hannah Roodhouse; Chase Kayrouz; Tiffany M Pham; Kou-San Ju
Journal:  J Am Chem Soc       Date:  2022-05-26       Impact factor: 16.383

2.  Amino acid (acyl carrier protein) ligase-associated biosynthetic gene clusters reveal unexplored biosynthetic potential.

Authors:  Vesna Simunović; Ivan Grubišić
Journal:  Mol Genet Genomics       Date:  2022-10-22       Impact factor: 2.980

3.  Freshwater bacteria release methane as a byproduct of phosphorus acquisition.

Authors:  Mengyin Yao; Cynthia Henny; Julia A Maresca
Journal:  Appl Environ Microbiol       Date:  2016-09-30       Impact factor: 4.792

4.  Discovery of phosphonic acid natural products by mining the genomes of 10,000 actinomycetes.

Authors:  Kou-San Ju; Jiangtao Gao; James R Doroghazi; Kwo-Kwang A Wang; Christopher J Thibodeaux; Steven Li; Emily Metzger; John Fudala; Joleen Su; Jun Kai Zhang; Jaeheon Lee; Joel P Cioni; Bradley S Evans; Ryuichi Hirota; David P Labeda; Wilfred A van der Donk; William W Metcalf
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

5.  Quinovosamycins: new tunicamycin-type antibiotics in which the α, β-1″,11'-linked N-acetylglucosamine residue is replaced by N-acetylquinovosamine.

Authors:  Neil Pj Price; David P Labeda; Todd A Naumann; Karl E Vermillion; Michael J Bowman; Mark A Berhow; William W Metcalf; Kenneth M Bischoff
Journal:  J Antibiot (Tokyo)       Date:  2016-05-18       Impact factor: 2.649

Review 6.  Microbial genome mining for accelerated natural products discovery: is a renaissance in the making?

Authors:  Brian O Bachmann; Steven G Van Lanen; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2013-12-17       Impact factor: 3.346

Review 7.  Recent examples of α-ketoglutarate-dependent mononuclear non-haem iron enzymes in natural product biosyntheses.

Authors:  Shu-Shan Gao; Nathchar Naowarojna; Ronghai Cheng; Xueting Liu; Pinghua Liu
Journal:  Nat Prod Rep       Date:  2018-08-15       Impact factor: 13.423

Review 8.  Targeting Bacterial Genomes for Natural Product Discovery.

Authors:  Edward Kalkreuter; Guohui Pan; Alexis J Cepeda; Ben Shen
Journal:  Trends Pharmacol Sci       Date:  2019-12-07       Impact factor: 14.819

9.  The genomic landscape of ribosomal peptides containing thiazole and oxazole heterocycles.

Authors:  Courtney L Cox; James R Doroghazi; Douglas A Mitchell
Journal:  BMC Genomics       Date:  2015-10-13       Impact factor: 3.969

10.  Phylogenomic Analysis of Natural Products Biosynthetic Gene Clusters Allows Discovery of Arseno-Organic Metabolites in Model Streptomycetes.

Authors:  Pablo Cruz-Morales; Johannes Florian Kopp; Christian Martínez-Guerrero; Luis Alfonso Yáñez-Guerra; Nelly Selem-Mojica; Hilda Ramos-Aboites; Jörg Feldmann; Francisco Barona-Gómez
Journal:  Genome Biol Evol       Date:  2016-07-02       Impact factor: 3.416

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