Literature DB >> 24269150

Proofreading of noncognate acyl adenylates by an acyl-coenzyme a ligase.

Miglena Manandhar1, John E Cronan2.   

Abstract

Aminoacyl-tRNA synthetases remove (proofread) incorrect substrates and thereby prevent errors in protein synthesis. We report enzyme-catalyzed pretransfer editing by pimeloyl-coenzyme A (CoA) ligase (BioW), a biotin synthetic enzyme that converts pimelate, a seven-carbon dicarboxylic acid, to its CoA ester. The noncognate BioW substrate glutaric acid results in hydrolysis of ATP to AMP with formation of only trace amounts of glutaryl-CoA, thereby mimicking pretransfer editing of incorrect aminoacyl-adenylates by aminoacyl-tRNA synthetases.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24269150      PMCID: PMC3927786          DOI: 10.1016/j.chembiol.2013.10.010

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  14 in total

1.  THE ENZYMATIC ACTIVATION OF AMINO ACIDS VIA THEIR ACYL-ADENYLATE DERIVATIVES.

Authors:  J A Demoss; S M Genuth; G D Novelli
Journal:  Proc Natl Acad Sci U S A       Date:  1956-06       Impact factor: 11.205

2.  The moderately efficient enzyme: evolutionary and physicochemical trends shaping enzyme parameters.

Authors:  Arren Bar-Even; Elad Noor; Yonatan Savir; Wolfram Liebermeister; Dan Davidi; Dan S Tawfik; Ron Milo
Journal:  Biochemistry       Date:  2011-05-04       Impact factor: 3.162

3.  Polyketide proofreading by an acyltransferase-like enzyme.

Authors:  Katja Jensen; Holger Niederkrüger; Katrin Zimmermann; Anna L Vagstad; Jana Moldenhauer; Nicole Brendel; Sarah Frank; Petra Pöplau; Christoph Kohlhaas; Craig A Townsend; Marco Oldiges; Christian Hertweck; Jörn Piel
Journal:  Chem Biol       Date:  2012-03-23

4.  The specificity of enzymic reactions. Aminoacyl-soluble RNA ligases.

Authors:  R B Loftfield; E A Eigner
Journal:  Biochim Biophys Acta       Date:  1966-12-28

5.  Transfer ribonucleic acid-induced hydrolysis of valyladenylate bound to isoleucyl ribonucleic acid synthetase.

Authors:  A N Baldwin; P Berg
Journal:  J Biol Chem       Date:  1966-02-25       Impact factor: 5.157

6.  Cloning, sequencing, and characterization of the Bacillus subtilis biotin biosynthetic operon.

Authors:  S Bower; J B Perkins; R R Yocum; C L Howitt; P Rahaim; J Pero
Journal:  J Bacteriol       Date:  1996-07       Impact factor: 3.490

7.  Biotin synthesis begins by hijacking the fatty acid synthetic pathway.

Authors:  Steven Lin; Ryan E Hanson; John E Cronan
Journal:  Nat Chem Biol       Date:  2010-08-08       Impact factor: 15.040

Review 8.  The balance between pre- and post-transfer editing in tRNA synthetases.

Authors:  Susan A Martinis; Michal T Boniecki
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

Review 9.  Conformational dynamics in the Acyl-CoA synthetases, adenylation domains of non-ribosomal peptide synthetases, and firefly luciferase.

Authors:  Andrew M Gulick
Journal:  ACS Chem Biol       Date:  2009-10-16       Impact factor: 5.100

10.  The Thermoplasma acidophilum LplA-LplB complex defines a new class of bipartite lipoate-protein ligases.

Authors:  Quin H Christensen; John E Cronan
Journal:  J Biol Chem       Date:  2009-06-11       Impact factor: 5.157

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  11 in total

1.  Pimelic acid, the first precursor of the Bacillus subtilis biotin synthesis pathway, exists as the free acid and is assembled by fatty acid synthesis.

Authors:  Miglena Manandhar; John E Cronan
Journal:  Mol Microbiol       Date:  2017-03-03       Impact factor: 3.501

Review 2.  Advances in synthesis of biotin and assembly of lipoic acid.

Authors:  John E Cronan
Journal:  Curr Opin Chem Biol       Date:  2018-09-17       Impact factor: 8.822

3.  Brassicaceae-specific Gretchen Hagen 3 acyl acid amido synthetases conjugate amino acids to chorismate, a precursor of aromatic amino acids and salicylic acid.

Authors:  Cynthia K Holland; Corey S Westfall; Jason E Schaffer; Alejandro De Santiago; Chloe Zubieta; Sophie Alvarez; Joseph M Jez
Journal:  J Biol Chem       Date:  2019-10-01       Impact factor: 5.157

4.  Arabidopsis thaliana GH3.5 acyl acid amido synthetase mediates metabolic crosstalk in auxin and salicylic acid homeostasis.

Authors:  Corey S Westfall; Ashley M Sherp; Chloe Zubieta; Sophie Alvarez; Evelyn Schraft; Romain Marcellin; Loren Ramirez; Joseph M Jez
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-14       Impact factor: 11.205

5.  Using the pimeloyl-CoA synthetase adenylation fold to synthesize fatty acid thioesters.

Authors:  Menglu Wang; Lucile Moynié; Peter J Harrison; Van Kelly; Andrew Piper; James H Naismith; Dominic J Campopiano
Journal:  Nat Chem Biol       Date:  2017-04-17       Impact factor: 15.040

6.  The pimeloyl-CoA synthetase BioW defines a new fold for adenylate-forming enzymes.

Authors:  Paola Estrada; Miglena Manandhar; Shi-Hui Dong; Jaigeeth Deveryshetty; Vinayak Agarwal; John E Cronan; Satish K Nair
Journal:  Nat Chem Biol       Date:  2017-04-17       Impact factor: 15.040

7.  A Canonical Biotin Synthesis Enzyme, 8-Amino-7-Oxononanoate Synthase (BioF), Utilizes Different Acyl Chain Donors in Bacillus subtilis and Escherichia coli.

Authors:  Miglena Manandhar; John E Cronan
Journal:  Appl Environ Microbiol       Date:  2017-12-15       Impact factor: 4.792

8.  Evolutionary importance of the intramolecular pathways of hydrolysis of phosphate ester mixed anhydrides with amino acids and peptides.

Authors:  Ziwei Liu; Damien Beaufils; Jean-Christophe Rossi; Robert Pascal
Journal:  Sci Rep       Date:  2014-12-11       Impact factor: 4.379

9.  Biochemical and structural characterization of the BioZ enzyme engaged in bacterial biotin synthesis pathway.

Authors:  Sitao Zhang; Yongchang Xu; Hongxin Guan; Tao Cui; Yuling Liao; Wenhui Wei; Jun Li; Bachar H Hassan; Huimin Zhang; Xu Jia; Songying Ouyang; Youjun Feng
Journal:  Nat Commun       Date:  2021-04-06       Impact factor: 14.919

10.  Three enigmatic BioH isoenzymes are programmed in the early stage of mycobacterial biotin synthesis, an attractive anti-TB drug target.

Authors:  Yongchang Xu; Jie Yang; Weihui Li; Shuaijie Song; Yu Shi; Lihan Wu; Jingdu Sun; Mengyun Hou; Jinzi Wang; Xu Jia; Huimin Zhang; Man Huang; Ting Lu; Jianhua Gan; Youjun Feng
Journal:  PLoS Pathog       Date:  2022-07-11       Impact factor: 7.464

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