Literature DB >> 24269094

The molecular basis of phenotypic variation in yeast.

Justin C Fay1.   

Abstract

The power of yeast genetics has now been extensively applied to phenotypic variation among strains of Saccharomyces cerevisiae. As a result, over 100 genes and numerous sequence variants have been identified, providing us with a general characterization of mutations underlying quantitative trait variation. Most quantitative trait alleles exert considerable phenotypic effects and alter conserved amino acid positions within protein coding sequences. When examined, quantitative trait alleles influence the expression of numerous genes, most of which are unrelated to an allele's phenotypic effect. The profile of quantitative trait alleles has proven useful to reverse quantitative genetics approaches and supports the use of systems genetics approaches to synthesize the molecular basis of trait variation across multiple strains.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24269094      PMCID: PMC3899683          DOI: 10.1016/j.gde.2013.10.005

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  43 in total

1.  Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors.

Authors:  Gaël Yvert; Rachel B Brem; Jacqueline Whittle; Joshua M Akey; Eric Foss; Erin N Smith; Rachel Mackelprang; Leonid Kruglyak
Journal:  Nat Genet       Date:  2003-08-03       Impact factor: 38.330

2.  Quantitative trait loci mapped to single-nucleotide resolution in yeast.

Authors:  Adam M Deutschbauer; Ronald W Davis
Journal:  Nat Genet       Date:  2005-11-06       Impact factor: 38.330

3.  A combined-cross analysis reveals genes with drug-specific and background-dependent effects on drug sensitivity in Saccharomyces cerevisiae.

Authors:  Hyun Seok Kim; Justin C Fay
Journal:  Genetics       Date:  2009-08-31       Impact factor: 4.562

4.  Population genomics and transcriptional consequences of regulatory motif variation in globally diverse Saccharomyces cerevisiae strains.

Authors:  Caitlin F Connelly; Daniel A Skelly; Maitreya J Dunham; Joshua M Akey
Journal:  Mol Biol Evol       Date:  2013-04-25       Impact factor: 16.240

5.  Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations.

Authors:  Jessica L Will; Hyun Seok Kim; Jessica Clarke; John C Painter; Justin C Fay; Audrey P Gasch
Journal:  PLoS Genet       Date:  2010-04-01       Impact factor: 5.917

6.  Dissecting the pleiotropic consequences of a quantitative trait nucleotide.

Authors:  Hyun Seok Kim; Juyoung Huh; Justin C Fay
Journal:  FEMS Yeast Res       Date:  2009-04-23       Impact factor: 2.796

7.  A noncomplementation screen for quantitative trait alleles in saccharomyces cerevisiae.

Authors:  Hyun Seok Kim; Juyoung Huh; Linda Riles; Alejandro Reyes; Justin C Fay
Journal:  G3 (Bethesda)       Date:  2012-07-01       Impact factor: 3.154

8.  ZRT1 Harbors an Excess of Nonsynonymous Polymorphism and Shows Evidence of Balancing Selection in Saccharomyces cerevisiae.

Authors:  Elizabeth K Engle; Justin C Fay
Journal:  G3 (Bethesda)       Date:  2013-04-09       Impact factor: 3.154

Review 9.  The loci of evolution: how predictable is genetic evolution?

Authors:  David L Stern; Virginie Orgogozo
Journal:  Evolution       Date:  2008-07-04       Impact factor: 3.694

10.  Finding the sources of missing heritability in a yeast cross.

Authors:  Joshua S Bloom; Ian M Ehrenreich; Wesley T Loo; Thúy-Lan Võ Lite; Leonid Kruglyak
Journal:  Nature       Date:  2013-02-03       Impact factor: 49.962

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  30 in total

1.  The Hidden Complexity of Mendelian Traits across Natural Yeast Populations.

Authors:  Jing Hou; Anastasie Sigwalt; Téo Fournier; David Pflieger; Jackson Peter; Jacky de Montigny; Maitreya J Dunham; Joseph Schacherer
Journal:  Cell Rep       Date:  2016-07-07       Impact factor: 9.423

2.  Fitness Trade-Offs Lead to Suppressor Tolerance in Yeast.

Authors:  Jing Hou; Joseph Schacherer
Journal:  Mol Biol Evol       Date:  2016-10-20       Impact factor: 16.240

Review 3.  Population perspectives on functional genomic variation in yeast.

Authors:  Daniel A Skelly; Paul M Magwene
Journal:  Brief Funct Genomics       Date:  2015-10-14       Impact factor: 4.241

4.  Domestication reprogrammed the budding yeast life cycle.

Authors:  Matteo De Chiara; Benjamin P Barré; Karl Persson; Agurtzane Irizar; Chiara Vischioni; Sakshi Khaiwal; Simon Stenberg; Onyetugo Chioma Amadi; Gašper Žun; Katja Doberšek; Cristian Taccioli; Joseph Schacherer; Uroš Petrovič; Jonas Warringer; Gianni Liti
Journal:  Nat Ecol Evol       Date:  2022-02-24       Impact factor: 19.100

5.  Barcoded bulk QTL mapping reveals highly polygenic and epistatic architecture of complex traits in yeast.

Authors:  Alex N Nguyen Ba; Katherine R Lawrence; Artur Rego-Costa; Shreyas Gopalakrishnan; Daniel Temko; Franziska Michor; Michael M Desai
Journal:  Elife       Date:  2022-02-11       Impact factor: 8.713

6.  Systems biology and the analysis of genetic variation.

Authors:  Shamil R Sunyaev; Frederick P Roth
Journal:  Curr Opin Genet Dev       Date:  2013-11-28       Impact factor: 5.578

7.  Simultaneous quantification of mRNA and protein in single cells reveals post-transcriptional effects of genetic variation.

Authors:  Christian Brion; Sheila M Lutz; Frank Wolfgang Albert
Journal:  Elife       Date:  2020-11-16       Impact factor: 8.140

8.  Genetics of trans-regulatory variation in gene expression.

Authors:  Frank Wolfgang Albert; Joshua S Bloom; Jake Siegel; Laura Day; Leonid Kruglyak
Journal:  Elife       Date:  2018-07-17       Impact factor: 8.140

9.  Mitochondrial Genome Variation Affects Multiple Respiration and Nonrespiration Phenotypes in Saccharomyces cerevisiae.

Authors:  Sriram Vijayraghavan; Stanislav G Kozmin; Pooja K Strope; Daniel A Skelly; Zhenguo Lin; John Kennell; Paul M Magwene; Fred S Dietrich; John H McCusker
Journal:  Genetics       Date:  2018-11-29       Impact factor: 4.402

10.  Natural variants suppress mutations in hundreds of essential genes.

Authors:  Leopold Parts; Amandine Batté; Maykel Lopes; Michael W Yuen; Meredith Laver; Bryan-Joseph San Luis; Jia-Xing Yue; Carles Pons; Elise Eray; Patrick Aloy; Gianni Liti; Jolanda van Leeuwen
Journal:  Mol Syst Biol       Date:  2021-05       Impact factor: 13.068

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