Literature DB >> 24268575

Tsix RNA and the germline factor, PRDM14, link X reactivation and stem cell reprogramming.

Bernhard Payer1, Michael Rosenberg1, Masashi Yamaji2, Yukihiro Yabuta2, Michiyo Koyanagi-Aoi3, Katsuhiko Hayashi4, Shinya Yamanaka5, Mitinori Saitou6, Jeannie T Lee7.   

Abstract

Transitions between pluripotent and differentiated states are marked by dramatic epigenetic changes. Cellular differentiation is tightly linked to X chromosome inactivation (XCI), whereas reprogramming to induced pluripotent stem cells (iPSCs) is associated with X chromosome reactivation (XCR). XCR reverses the silent state of the inactive X, occurring in mouse blastocysts and germ cells. In spite of its importance, little is known about underlying mechanisms. Here, we examine the role of the long noncoding Tsix RNA and the germline factor, PRDM14. In blastocysts, XCR is perturbed by mutation of either Tsix or Prdm14. In iPSCs, XCR is disrupted only by PRDM14 deficiency, which also affects iPSC derivation and maintenance. We show that Tsix and PRDM14 directly link XCR to pluripotency: first, PRDM14 represses Rnf12 by recruiting polycomb repressive complex 2; second, Tsix enables PRDM14 to bind Xist. Thus, our study provides functional and mechanistic links between cellular and X chromosome reprogramming.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 24268575      PMCID: PMC3950835          DOI: 10.1016/j.molcel.2013.10.023

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  57 in total

1.  Epigenetic dynamics of imprinted X inactivation during early mouse development.

Authors:  Ikuhiro Okamoto; Arie P Otte; C David Allis; Danny Reinberg; Edith Heard
Journal:  Science       Date:  2003-12-11       Impact factor: 47.728

2.  Sequence-specific regulator Prdm14 safeguards mouse ESCs from entering extraembryonic endoderm fates.

Authors:  Ziyang Ma; Tomek Swigut; Anton Valouev; Alvaro Rada-Iglesias; Joanna Wysocka
Journal:  Nat Struct Mol Biol       Date:  2010-12-23       Impact factor: 15.369

3.  Jpx RNA activates Xist by evicting CTCF.

Authors:  Sha Sun; Brian C Del Rosario; Attila Szanto; Yuya Ogawa; Yesu Jeon; Jeannie T Lee
Journal:  Cell       Date:  2013-06-20       Impact factor: 41.582

4.  Molecular coupling of Xist regulation and pluripotency.

Authors:  Pablo Navarro; Ian Chambers; Violetta Karwacki-Neisius; Corinne Chureau; Céline Morey; Claire Rougeulle; Philip Avner
Journal:  Science       Date:  2008-09-19       Impact factor: 47.728

5.  Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution.

Authors:  Nimet Maherali; Rupa Sridharan; Wei Xie; Jochen Utikal; Sarah Eminli; Katrin Arnold; Matthias Stadtfeld; Robin Yachechko; Jason Tchieu; Rudolf Jaenisch; Kathrin Plath; Konrad Hochedlinger
Journal:  Cell Stem Cell       Date:  2007-06-07       Impact factor: 24.633

6.  A high-efficiency system for the generation and study of human induced pluripotent stem cells.

Authors:  Nimet Maherali; Tim Ahfeldt; Alessandra Rigamonti; Jochen Utikal; Chad Cowan; Konrad Hochedlinger
Journal:  Cell Stem Cell       Date:  2008-09-11       Impact factor: 24.633

7.  The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation.

Authors:  Di Tian; Sha Sun; Jeannie T Lee
Journal:  Cell       Date:  2010-10-29       Impact factor: 41.582

8.  Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts.

Authors:  Masato Nakagawa; Michiyo Koyanagi; Koji Tanabe; Kazutoshi Takahashi; Tomoko Ichisaka; Takashi Aoi; Keisuke Okita; Yuji Mochiduki; Nanako Takizawa; Shinya Yamanaka
Journal:  Nat Biotechnol       Date:  2007-11-30       Impact factor: 54.908

9.  Intersection of the RNA interference and X-inactivation pathways.

Authors:  Yuya Ogawa; Bryan K Sun; Jeannie T Lee
Journal:  Science       Date:  2008-06-06       Impact factor: 47.728

10.  X chromosome activity in mouse XX primordial germ cells.

Authors:  Susana M Chuva de Sousa Lopes; Katsuhiko Hayashi; Tanya C Shovlin; Will Mifsud; M Azim Surani; Anne McLaren
Journal:  PLoS Genet       Date:  2008-02       Impact factor: 5.917

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  49 in total

1.  Functional Proteomic Analysis of Repressive Histone Methyltransferase Complexes Reveals ZNF518B as a G9A Regulator.

Authors:  Verena K Maier; Caitlin M Feeney; Jordan E Taylor; Amanda L Creech; Jana W Qiao; Attila Szanto; Partha P Das; Nicholas Chevrier; Catherine Cifuentes-Rojas; Stuart H Orkin; Steven A Carr; Jacob D Jaffe; Philipp Mertins; Jeannie T Lee
Journal:  Mol Cell Proteomics       Date:  2015-02-13       Impact factor: 5.911

2.  Coupling of X-chromosome reactivation with the pluripotent stem cell state.

Authors:  Bernhard Payer; Jeannie T Lee
Journal:  RNA Biol       Date:  2014-08-19       Impact factor: 4.652

3.  Sphere formation permits Oct4 reprogramming of ciliary body epithelial cells into induced pluripotent stem cells.

Authors:  Aiguo Ni; Ming Jing Wu; Sai H Chavala
Journal:  Stem Cells Dev       Date:  2014-12-15       Impact factor: 3.272

4.  Allelic Imbalance Is a Prevalent and Tissue-Specific Feature of the Mouse Transcriptome.

Authors:  Stefan F Pinter; David Colognori; Brian J Beliveau; Ruslan I Sadreyev; Bernhard Payer; Eda Yildirim; Chao-Ting Wu; Jeannie T Lee
Journal:  Genetics       Date:  2015-04-09       Impact factor: 4.562

Review 5.  Long noncoding RNAs in cell-fate programming and reprogramming.

Authors:  Ryan A Flynn; Howard Y Chang
Journal:  Cell Stem Cell       Date:  2014-06-05       Impact factor: 24.633

6.  X chromosome reactivation dynamics reveal stages of reprogramming to pluripotency.

Authors:  Vincent Pasque; Jason Tchieu; Rahul Karnik; Molly Uyeda; Anupama Sadhu Dimashkie; Dana Case; Bernadett Papp; Giancarlo Bonora; Sanjeet Patel; Ritchie Ho; Ryan Schmidt; Robin McKee; Takashi Sado; Takashi Tada; Alexander Meissner; Kathrin Plath
Journal:  Cell       Date:  2014-12-18       Impact factor: 41.582

Review 7.  Unwind and transcribe: chromatin reprogramming in the early mammalian embryo.

Authors:  Steffen Biechele; Chih-Jen Lin; Paolo F Rinaudo; Miguel Ramalho-Santos
Journal:  Curr Opin Genet Dev       Date:  2015-07-13       Impact factor: 5.578

Review 8.  Dynamic interplay and function of multiple noncoding genes governing X chromosome inactivation.

Authors:  Minghui Yue; John Lalith Charles Richard; Yuya Ogawa
Journal:  Biochim Biophys Acta       Date:  2015-08-07

Review 9.  X chromosome regulation: diverse patterns in development, tissues and disease.

Authors:  Xinxian Deng; Joel B Berletch; Di K Nguyen; Christine M Disteche
Journal:  Nat Rev Genet       Date:  2014-04-15       Impact factor: 53.242

10.  Widespread organ tolerance to Xist loss and X reactivation except under chronic stress in the gut.

Authors:  Lin Yang; Eda Yildirim; James E Kirby; William Press; Jeannie T Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-10       Impact factor: 11.205

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