Literature DB >> 24268562

A wise consistency: engineering biology for conformity, reliability, predictability.

Adam Paul Arkin1.   

Abstract

The next generation of synthetic biology applications will increasingly involve engineered organisms that exist in intimate contact with humans, animals and the rest of the environment. Examples include cellular and viral approaches for maintaining and improving health in humans and animals. The need for reliable and specific function in these environments may require more complex system designs than previously. In these cases the uncertainties in the behavior of biological building blocks, their hosts and their environments present a challenge for design of predictable and safe systems. Here, we review systematic methods for the effective characterization of these uncertainties that are lowering the barriers to predictive design of reliable complex biological systems.
Copyright © 2013 The Author. Published by Elsevier Ltd.. All rights reserved.

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Year:  2013        PMID: 24268562     DOI: 10.1016/j.cbpa.2013.09.012

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  24 in total

1.  A Barcoding Strategy Enabling Higher-Throughput Library Screening by Microscopy.

Authors:  Robert Chen; Harneet S Rishi; Vladimir Potapov; Masaki R Yamada; Vincent J Yeh; Thomas Chow; Celia L Cheung; Austin T Jones; Terry D Johnson; Amy E Keating; William C DeLoache; John E Dueber
Journal:  ACS Synth Biol       Date:  2015-07-15       Impact factor: 5.110

2.  Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals.

Authors:  Evan J Olson; Lucas A Hartsough; Brian P Landry; Raghav Shroff; Jeffrey J Tabor
Journal:  Nat Methods       Date:  2014-03-09       Impact factor: 28.547

Review 3.  Synthetic biology to access and expand nature's chemical diversity.

Authors:  Michael J Smanski; Hui Zhou; Jan Claesen; Ben Shen; Michael A Fischbach; Christopher A Voigt
Journal:  Nat Rev Microbiol       Date:  2016-03       Impact factor: 60.633

4.  Engineering repressors with coevolutionary cues facilitates toggle switches with a master reset.

Authors:  Rey P Dimas; Xian-Li Jiang; Jose Alberto de la Paz; Faruck Morcos; Clement T Y Chan
Journal:  Nucleic Acids Res       Date:  2019-06-04       Impact factor: 16.971

Review 5.  Principles of genetic circuit design.

Authors:  Jennifer A N Brophy; Christopher A Voigt
Journal:  Nat Methods       Date:  2014-05       Impact factor: 28.547

Review 6.  How to train your microbe: methods for dynamically characterizing gene networks.

Authors:  Sebastian M Castillo-Hair; Oleg A Igoshin; Jeffrey J Tabor
Journal:  Curr Opin Microbiol       Date:  2015-02-10       Impact factor: 7.934

7.  Engineered promoters enable constant gene expression at any copy number in bacteria.

Authors:  Thomas H Segall-Shapiro; Eduardo D Sontag; Christopher A Voigt
Journal:  Nat Biotechnol       Date:  2018-03-19       Impact factor: 54.908

8.  Spatial and functional heterogeneities shape collective behavior of tumor-immune networks.

Authors:  Daniel K Wells; Yishan Chuang; Louis M Knapp; Dirk Brockmann; William L Kath; Joshua N Leonard
Journal:  PLoS Comput Biol       Date:  2015-04-23       Impact factor: 4.475

Review 9.  Designer cell signal processing circuits for biotechnology.

Authors:  Robert W Bradley; Baojun Wang
Journal:  N Biotechnol       Date:  2015-01-08       Impact factor: 5.079

10.  Modelling the effects of cell-to-cell variability on the output of interconnected gene networks in bacterial populations.

Authors:  Nicolò Politi; Lorenzo Pasotti; Susanna Zucca; Paolo Magni
Journal:  BMC Syst Biol       Date:  2015-06-01
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