| Literature DB >> 24260273 |
Georgia Chachami1, Alkmini Kalousi, Loukia Papatheodorou, Aggeliki Lyberopoulou, Vasileios Nasikas, Keiji Tanimoto, George Simos, Konstantinos N Malizos, Eleni Georgatsou.
Abstract
Bone hypoxia resulting from impaired blood flow is the final pathway for the development of osteonecrosis (ON). The aim of this study was to evaluate if HIF-1α, the major transcription factor triggered by hypoxia, is genetically implicated in susceptibility to ON. For this we analyzed frequencies of three known HIF-1α polymorphisms: one in exon 2 (C111A) and two in exon 12 (C1772T and G1790A) and their association with ON in a Greek population. Genotype analysis was performed using PCR-RFLP and rare alleles were further confirmed with sequencing. We found that genotype and allele frequency of C1772T and G1790A SNP of HIF-1α (SNPs found in our cohort) were not significantly different in ON patients compared to control patients. Furthermore these SNPs could not be associated with the different subgroups of ON. At the protein level we observed that the corresponding mutations (P582S and A588T, respectively) are not significant for protein function since the activity, expression and localization of the mutant proteins is practically indistinguishable from wt in HEK293 and Saos-2 cells. These results suggest that these missense mutations in the HIF-1α gene are not important for the risk of developing ON.Entities:
Mesh:
Substances:
Year: 2013 PMID: 24260273 PMCID: PMC3832621 DOI: 10.1371/journal.pone.0079647
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Clinical characteristics of controls and ON patients used in this study.
| Control (N = 63) | Patients (N = 134) | Idiopathic (n = 32) | Steroid-induced (n = 78) | Other etiology (n = 24) | P | |
|
| 36.6 (17–59) | 39.8 (18–69) | 46.6 (23–69) | 37.3 (18–69) | 38.5 (18–62) | 0.086 |
|
| 47/16 | 88/46 | 22/10 | 45/33 | 19/5 | 0.25 |
|
| ||||||
|
| 0 (0%) | 21 (15.7%) | 7 (21.8%) | 9 (11.5%) | 5 (20.8%) | <0.001 |
|
| 0 (0%) | 11 (8.2%) | 5 (15.6%) | 4 (5.1%) | 2 (8.3%) | 0.018 |
|
| 0 (0%) | 5 (3.7%) | 2 (6.2%) | 2 (2.5%) | 1 (4.1%) | 0.179 |
|
| 0 (0%) | 13 (9.7%) | 0 (0%) | 13 (16.7%) | 0 (0%) | 0.01 |
|
| 0 (0%) | 20 (14.9) | 0 (0%) | 20 (25.6%) | 0 (0%) | <0.001 |
|
| 25.8 | 25.75 | 26.25 | 25.82 | 24.87 | 0.406 |
P values for differences between patients and controls.
Figure 1Analysis of HIF-1α polymorhisms using RFLP.
(A) Analysis of HIF-1α gene C1772T polymorphism with HphI enzyme, shown on 2% agarose electrophoresis. CT heterozygous genotype yielded three bands 467, 251 and 216 bp; C allele wt yielded two bands (251 and 216 bp). T allele remained uncut and yielded one fragment at 467 bp. Molecular weight standards are shown on the right. (B) Chromatograms of DNA sequence analysis of HIF-1α exon12 fragment showing the corresponding C, CT, T allelic variations at position 1772. (C) Analysis of HIF-1α gene G1790A polymorphism with AciI enzyme, shown on 2% agarose electrophoresis. G allele wt yielded two bands (269 and 198 bp). A allele would remained uncut and yielded one fragment at 467 bp, as represented. Molecular weight standards are shown on the right. (D) Analysis of HIF-1α gene C111A polymorphism with BglII enzyme, shown on 2% agarose electrophoresis. C allele wt yielded two bands (143 and 44 bp). A allele would remained uncut and yielded one fragment at 187 bp. Molecular weight standards are shown on the right.
Frequencies of HIF-1α polymorphisms between ON patients and controls.
| SNPs | POSITION | GENOTYPE | FREQUENCY | HWE | |||||||||
| control | patients | control | patients | control | patients | ||||||||
|
| exon 12 | CC | CT | TT | N | CC | CT | TT | N | 0.111 | 0.126 | 0.777 | 0.367 |
| 50 | 12 | 1 | 63 | 101 | 32 | 1 | 134 | ||||||
|
| exon 12 | GG | GA | AA | N | GG | GA | AA | N | 0.024 | 0.011 | 0.846 | <0.0001 |
| 60 | 3 | 0 | 63 | 132 | 1 | 1 | 134 | ||||||
|
| exon 2 | CC | CA | AA | N | CC | CA | AA | N | 0 | 0 | nc | nc |
| 63 | 0 | 0 | 63 | 134 | 0 | 0 | 134 | ||||||
Frequencies of rare alleles.
P values of deviation from HWE, in patients and controls.
HIF-1α SNP genotype and allele frequencies between ON patients and control subjects.
| SNPs | n (%) ON patients | n (%) controls | P-value | OR (95% CI) |
| C1772T | n = 134 | n = 63 | ||
|
| ||||
| CC | 101 (75.4) | 50 (79.4) | ||
| CT | 32 (23.9) | 12 (19) | ||
| TT | 1 (0.7) | 1 (1.6) | ||
| CT+TT | 33 (24.6) | 13 (20.6) | 0.5917 | 1.257 (0.6080 to 2.597) |
|
| ||||
| C | 234 (87.3) | 112 (88.9) | ||
| T | 34 (12.7) | 14 (11.1) | 0.7425 | 1.162 (0.5996 to 2.254) |
|
| ||||
|
| ||||
| GG | 132 (98.5) | 60 (95.2) | ||
| GA | 1 (0.75) | 3 (4.8) | ||
| AA | 1 (0.75) | 0 (0) | ||
| GA+AA | 2 (1.5) | 3 (4.8) | 0.3297 | 0.303 (0.04932 to 1.862) |
|
| ||||
| G | 265 (98.9) | 123 (97.6) | ||
| A | 3 (1.1) | 3 (2.4) | 0.3894 | 2.154 (0.4285 to 10.83) |
|
| ||||
|
| ||||
| CC | 134 (100) | 63 (100) | ||
| CA | 0 (0) | 0 (0) | ||
| AA | 0 (0) | 0 (0) | ||
| CA+AA | 0 (0) | 0 (0) | nc | nc |
|
| ||||
| C | 268 (100) | 126 (100) | ||
| A | 0 (0) | 0 (0) | nc | nc |
Fisher chi-square analysis, P values <0.05 are considered as statistically significant.
OR, Odds ratio; CI, confidence interval.
Calculations were performed for genotypes: CC vs CT+TT, GG vs GA+AA.
nc: not calculated.
HIF-1α SNP genotype and allele frequencies between subcategories of ON patients and control subjects.
| SNPs | n (%) controls | n (%) ON patients | P-value | OR (95% CI) | ||||||
| idiopathic | steroid induced | other etiology | vs idiop. | vs steroid | vs other etiology | vs idiop. | vs steroid | vs other etiology | ||
| C1772T | n = 63 | n = 32 | n = 78 | n = 24 | ||||||
|
| ||||||||||
| CC | 50 (79.4) | 26 (81.25) | 57 (73.0) | 18 (75) | ||||||
| CT | 12 (19) | 6 (18.75) | 21 (27.0) | 5 (21) | ||||||
| TT | 1 (1.6) | 0 (0) | 0 (0) | 1 (4) | ||||||
| CT+TT | 13 (20.6) | 6 (18.75) | 21 (27.3) | 6 (25) | 1.000 | 0.433 | 0.773 | 0.887 (0.302 to 2.607) | 1.417 (0.644 to 3.120) | 1.282 (0.436 to 3.881) |
|
| ||||||||||
| C | 112 (88.9) | 58 (90.6) | 135 (86.5) | 41 (85) | ||||||
| T | 14 (11.1) | 6 (9.4) | 21 (13.5) | 7 (15) | 0.807 | 0.590 | 0.604 | 0.827 (0.302 to 2.267) | 1.244 (0.605 to 2.560) | 1.366 (0.515 to 3.623) |
Fisher chi-square analysis, P values <0.05 are considered as statistically significant.
OR, Odds ratio; CI, confidence interval.
Calculations were performed for genotypes: CC vs CT+TT.
Figure 2P582S and A588T mutations do not affect HIF-1α transcriptional activity, localization and expression.
HIF-1α transcriptional activity was determined 24 h after co-transfection of Saos-2 (A) and HEK293 cells (B) with plasmids expressing the indicated proteins together with the pGL3–5HRE-VEGF reporter plasmid. Values (as relative luminescence units) were determined as a ratio of firefly luciferase activity over Renilla luciferase activity and represent the mean of four different experiments performed in triplicate (+/- S.E.). Statistical differences were assessed using unpaired-t-test. P values>0.05 were considered as statistically non-significant (ns). Saos-2 (C) and HEK293 cells (D) where transfected with plasmids expressing the indicated proteins and their localization was observed after 24 h, with immunofluoresence, using an anti-FLAG antibody. Protein levels of FLAG-HIF-1α wt and mutants were determined in Saos-2 (E) and HEK293 (F) cells after 24-48 h post-transfection, in Western blot using a monoclonal anti-HIF-1α antibody and anti-tubulin as loading control. Densitometric analysis of the bands was performed with the public domain software for image analysis ‘ImageJ’. FLAG-HIF-1α quantities were normalized against corresponding tubulin and expressed as fold increase against wt FLAG-HIF-1α (100%).