| Literature DB >> 24260099 |
Haijian Wu1, Naian Qiao, Yang Wang, Man Jiang, Shikun Wang, Cuihong Wang, Likuan Hu.
Abstract
BACKGROUND: A common genetic variant, telomerase reverse transcriptase (TERT) rs2736098, was recently reported to be associated with lung cancer risk in Caucasians. In addition, many studies have investigated the role of this polymorphism in the etiology of cancer of various organs. Nevertheless, the results of related case-control studies remain inconsistent.Entities:
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Year: 2013 PMID: 24260099 PMCID: PMC3834105 DOI: 10.1371/journal.pone.0076372
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Selected characteristics of non-small-cell lung cancer cases and controls.
| Characteristics | N (%) |
| |
| Cases (n = 539) | Controls (n = 627) | ||
| Age (years) | |||
| ≤60 | 278(51.6) | 316(50.4) | 0.688 |
| >60 | 261(48.4) | 311(49.6) | |
| Sex | |||
| Male | 419(77.7) | 500(79.7) | 0.403 |
| Female | 120(22.3) | 127(20.3) | |
| Smoking status | |||
| Ever | 279(51.8) | 270(43.1) | 0.003 |
| Never | 260(48.2) | 357(56.9) | |
| Histology | |||
| SQC | 246(45.6) | ||
| ADC | 293(54.4) | ||
Abbreviations: ADC, adenocarcinoma; SQC, squamous cell carcinoma.
P value was calculated by the χ2 test.
Association between the rs2736098 polymorphism and non-small-cell lung cancer risk in a Chinese Han population.
| Genotypes | Cases (n = 539), N (%) | Controls | OR (95%CI) |
|
| Total | ||||
| GG | 205 (38.0) | 263(41.9) | 1.00 | |
| AG | 232(43.0) | 278(44.3) | 1.09(0.85–1.41) | 0.501 |
| AA | 102(18.9) | 86 (13.7) | 1.48(1.05–2.09) | 0.025 |
| AA+AG | 334/205 | 364/263 | 1.18(0.93–1.50) | 0.163 |
| A allele | 1.21(1.02–1.43) | 0.028 | ||
| ADC | ||||
| GG | 106(36.2) | 263(41.9) | 1.00 | |
| AG | 126(43.0) | 278(44.3) | 1.13(0.83–1.54) | 0.450 |
| AA | 61(20.8) | 86(13.7) | 1.67(1.12–2.50) | 0.013 |
| AA+AG | 187/106 | 364/263 | 1.25(0.94–1.67) | 0.132 |
| A allele | 1.28(1.05–1.57) | 0.016 | ||
| SQC | ||||
| GG | 99(40.2) | 263(41.9) | 1.00 | |
| AG | 106(43.1) | 278(44.3) | 1.07(0.77–1.49) | 0.672 |
| AA | 41(16.7) | 86 (13.7) | 1.23(0.78–1.94) | 0.375 |
| AA+AG | 147/99 | 364/263 | 1.12(0.82–1.52) | 0.487 |
| A allele | 1.11(0.89–1.38) | 0.363 |
Abbreviations: OR, odds ratio; CI, confidence interval; ADC, adenocarcinoma; SQC, squamous cell carcinoma.
The observed genotype frequency among the control subjects was in agreement with the Hardy–Weinberg equilibrium (P = 0.361).
ORs and their corresponding 95% CIs were calculated by multivariate logistic regression after adjusting for age, sex and smoking status.
Characteristics of the studies included in the meta-analysis.
| First author | Published year | Country | Ethnicity | Cancer type | Control source | Genotyping method | Cases | Controls |
| ||||
| AA | AG | GG | AA | AG | GG | ||||||||
| Savage | 2007 | Poland | Caucasian | Breast cancer | PB | TaqMan | 97 | 699 | 1171 | 141 | 811 | 1313 | 0.294 |
| Choi | 2009 | Korea | Asian | Lung cancer | HB | PCR | 87 | 322 | 311 | 55 | 320 | 345 | 0.102 |
| Liu | 2010 | USA | Caucasian | SCCHN | HB | TaqMan | 72 | 419 | 588 | 78 | 461 | 576 | 0.271 |
| Chen | 2011 | China | Asian | Glioma | HB | PCR | 141 | 461 | 351 | 117 | 486 | 430 | 0.246 |
| Ding | 2011 | China | Asian | HCC | HB | TaqMan | 210 | 563 | 500 | 198 | 604 | 526 | 0.255 |
| Gago-Dominguez | 2011 | USA | Caucasian | Bladder cancer | PB | TaqMan | 43 | 189 | 217 | 43 | 210 | 278 | 0.706 |
| Gago-Dominguez | 2011 | China | Asian | Bladder cancer | PB | TaqMan | 85 | 236 | 178 | 54 | 270 | 203 | 0.009 |
| Wang | 2012 | China | Asian | Cervical cancer | PB | TaqMan | 174 | 444 | 375 | 138 | 480 | 397 | 0.710 |
| Hofer | 2012 | Austria | Caucasian | Colorectal cancer | PB | TaqMan | 6 | 45 | 86 | 119 | 623 | 963 | 0.186 |
| Zhang | 2013 | China | Asian | HCC | HB | PCR | 61 | 206 | 133 | 65 | 158 | 177 | 0.004 |
| Li | 2013 | China | Asian | Lung cancer | HB | TaqMan | 88 | 207 | 173 | 67 | 250 | 227 | 0.886 |
| Sheng | 2013 | China | Asian | ALL | HB | TaqMan | 93 | 238 | 236 | 96 | 298 | 276 | 0.286 |
| Present study | 2013 | China | Asian | Lung cancer | HB | TaqMan | 102 | 232 | 205 | 86 | 278 | 263 | 0.361 |
Abbreviations: SCCHN, squamous cell carcinoma of the head and neck; HCC, hepatocellular carcinoma; ALL, acute lymphoblastic leukemia; PB, population based; HB, hospital based; HWE, Hardy-Weinberg equilibrium.
Meta-analysis of the rs2736098 polymorphism in association with cancer risk.
| Variables | N | AA vs. GG | AG vs. GG | Dominant | Recessive | Additive | ||||||||||
| (AA+AG vs. GG) | (AA vs. AG+GG) | (2*AA+AG vs. 2*GG+AG) | ||||||||||||||
| OR(95%CI) |
|
| OR(95%CI) |
|
| OR(95%CI) |
|
| OR(95%CI) |
|
| OR(95%CI) |
|
| ||
| Total | 13 |
| 0.001 | 63.0 | 1.02(0.97–1.08) | 0.056 | 41.8 | 1.08(0.99–1.18) | 0.010 | 54.3 |
| 0.002 | 61.3 |
| 0.001 | 64.8 |
| Cancer type | ||||||||||||||||
| Lung cancer | 3 |
| 0.829 | 0.0 | 1.09(0.95–1.26) | 0.969 | 0.0 |
| 0.976 | 0.0 |
| 0.841 | 0.0 |
| 0.936 | 0.0 |
| HCC | 2 | 1.15(0.94–1.40) | 0.642 | 0.0 | 1.12(0.97–1.30) | 0.001 | 90.3 | 1.25(0.80–1.94) | 0.007 | 86.4 | 1.08(0.89–1.30) | 0.379 | 0.0 | 1.11(0.94–1.31) | 0.147 | 52.5 |
| Bladder cancer | 2 |
| 0.275 | 16.1 | 1.07(0.89–1.29) | 0.448 | 0.0 | 1.15(0.96–1.38) | 0.831 | 0.0 |
| 0.169 | 47.1 |
| 0.598 | 0.0 |
| Other cancers | 6 | 1.05(0.82–1.35) | 0.006 | 69.7 | 0.97(0.90–1.05) | 0.369 | 7.4 | 0.99(0.89–1.10) | 0.078 | 49.5 | 1.07(0.86–1.33) | 0.013 | 65.2 | 1.01(0.90–1.12) | 0.005 | 70.0 |
| Ethnicity | ||||||||||||||||
| Caucasian | 4 | 0.88(0.69–1.13) | 0.208 | 34.0 | 0.95(0.87–1.05) | 0.341 | 10.4 | 0.94(0.83–1.06) | 0.205 | 34.5 | 0.89(0.72–1.10) | 0.307 | 16.9 | 0.95(0.85–1.06) | 0.136 | 45.8 |
| Asian | 9 |
| 0.257 | 20.9 | 1.07(0.99–1.15) | 0.087 | 42.1 |
| 0.207 | 26.7 |
| 0.132 | 35.8 |
| 0.394 | 4.9 |
| Source of control | ||||||||||||||||
| PB | 5 | 1.12(0.78–1.61) | 0.002 | 76.9 | 0.98(0.90–1.07) | 0.642 | 0.0 | 1.01(0.90–1.13) | 0.203 | 32.8 | 1.13(0.80–1.60) | 0.001 | 77.5 | 1.04(0.91–1.19) | 0.007 | 71.8 |
| HB | 8 |
| 0.071 | 46.4 | 1.05(0.98–1.14) | 0.019 | 58.3 |
| 0.015 | 59.9 |
| 0.088 | 43.6 |
| 0.020 | 57.8 |
| Publication bias | ||||||||||||||||
| Begg's test |
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| Egger's test |
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P: test for heterogeneity; OR: odds ratio; CI: confidence interval; N: number of comparisons.
The figures given in bold indicate statistically significant values.
Figure 1Forest plot of cancer risk associated with the rs2736098 polymorphism (additive model).
The squares and horizontal lines correspond to the study-specific OR and 95% CI. The area of the squares reflects the study-specific weight (inverse of the variance). The diamonds represent the summary OR and 95% CI. The rs2736098 polymorphism was weakly associated with an increased risk of cancer in the additive model.
Figure 2Forest plot of cancer risk associated with the rs2736098 polymorphism (AA vs. GG).
The rs2736098 polymorphism was associated with an increased risk of cancer in the homozygote comparison (AA vs. GG).
Figure 3Sensitivity analysis of the summary OR on the association between the rs2736098 polymorphism and cancer risk under the additive model.
The results were computed by omitting each study (left column) in turn. Meta-analysis random-effect estimates were used. Bars, 95% CI.
Figure 4Begg's funnel plot for publication bias (additive model).
Each point represents a separate study for the indicated association. Log[or], natural logarithm of the odds ratio. Horizontal line, mean effect size.