Literature DB >> 24259229

Vibrational biospectroscopy coupled with multivariate analysis extracts potentially diagnostic features in blood plasma/serum of ovarian cancer patients.

Gemma L Owens1, Ketan Gajjar, Júlio Trevisan, Simon W Fogarty, Siân E Taylor, Bianca Da Gama-Rose, Pierre L Martin-Hirsch, Francis L Martin.   

Abstract

Despite numerous advances in "omics" research, early detection of ovarian cancer still remains a challenge. The aim of this study was to determine whether attenuated total reflection Fourier-transform infrared (ATR-FTIR) or Raman spectroscopy could characterise alterations in the biomolecular signatures of human blood plasma/serum obtained from ovarian cancer patients compared to non-cancer controls. Blood samples isolated from ovarian cancer patients (n = 30) and healthy controls (n = 30) were analysed using ATR-FTIR spectroscopy. For comparison, a smaller cohort of samples (n = 8) were analysed using an InVia Renishaw Raman spectrometer. Resultant spectra were pre-processed prior to being inputted into principal component analysis (PCA) and linear discriminant analysis (LDA). Statistically significant differences (P < 0.001) were observed between spectra of ovarian cancer versus control subjects for both biospectroscopy methods. Using a support vector machine classifier for Raman spectra of blood plasma, a diagnostic accuracy of 74% was achieved, while the same classifier showed 93.3% accuracy for IR spectra of blood plasma. These observations suggest that a biospectroscopy approach could be applied to identify spectral alterations associated with the presence of insidious ovarian cancer.
Copyright © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  ATR-FTIR spectroscopy; PCA-LDA; Raman spectroscopy; biospectroscopy; blood; ovarian cancer

Mesh:

Substances:

Year:  2013        PMID: 24259229     DOI: 10.1002/jbio.201300157

Source DB:  PubMed          Journal:  J Biophotonics        ISSN: 1864-063X            Impact factor:   3.207


  16 in total

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2.  Postmortem diagnosis of fatal hypothermia/hyperthermia by spectrochemical analysis of plasma.

Authors:  Hancheng Lin; Donghua Zou; Yiwen Luo; Lei Wang; Zhong Zhang; Ji Zhang; Yijiu Chen; Zhenyuan Wang; Ping Huang
Journal:  Forensic Sci Med Pathol       Date:  2019-05-03       Impact factor: 2.007

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Authors:  Saranjam Khan; Rahat Ullah; Asifullah Khan; Noorul Wahab; Muhammad Bilal; Mushtaq Ahmed
Journal:  Biomed Opt Express       Date:  2016-05-18       Impact factor: 3.732

4.  Gold nanoparticles as a substrate in bio-analytical near-infrared surface-enhanced Raman spectroscopy.

Authors:  Holly J Butler; Simon W Fogarty; Jemma G Kerns; Pierre L Martin-Hirsch; Nigel J Fullwood; Francis L Martin
Journal:  Analyst       Date:  2015-03-24       Impact factor: 4.616

5.  Brain tumour differentiation: rapid stratified serum diagnostics via attenuated total reflection Fourier-transform infrared spectroscopy.

Authors:  James R Hands; Graeme Clemens; Ryan Stables; Katherine Ashton; Andrew Brodbelt; Charles Davis; Timothy P Dawson; Michael D Jenkinson; Robert W Lea; Carol Walker; Matthew J Baker
Journal:  J Neurooncol       Date:  2016-02-13       Impact factor: 4.130

6.  Use of Fourier-transform infrared spectroscopy in the diagnosis of rheumatoid arthritis: a pilot study.

Authors:  Lukasz Lechowicz; Magdalena Chrapek; Jozef Gaweda; Mariusz Urbaniak; Iwona Konieczna
Journal:  Mol Biol Rep       Date:  2016-09-17       Impact factor: 2.316

7.  Subtle effects of environmental stress observed in the early life stages of the Common frog, Rana temporaria.

Authors:  Rebecca Strong; Francis L Martin; Kevin C Jones; Richard F Shore; Crispin J Halsall
Journal:  Sci Rep       Date:  2017-03-20       Impact factor: 4.379

8.  Using Fourier transform IR spectroscopy to analyze biological materials.

Authors:  Matthew J Baker; Júlio Trevisan; Paul Bassan; Rohit Bhargava; Holly J Butler; Konrad M Dorling; Peter R Fielden; Simon W Fogarty; Nigel J Fullwood; Kelly A Heys; Caryn Hughes; Peter Lasch; Pierre L Martin-Hirsch; Blessing Obinaju; Ganesh D Sockalingum; Josep Sulé-Suso; Rebecca J Strong; Michael J Walsh; Bayden R Wood; Peter Gardner; Francis L Martin
Journal:  Nat Protoc       Date:  2014-07-03       Impact factor: 13.491

9.  Relapsing-Remitting Multiple Sclerosis diagnosis from cerebrospinal fluids via Fourier transform infrared spectroscopy coupled with multivariate analysis.

Authors:  Dilek Yonar; Levent Ocek; Bedile Irem Tiftikcioglu; Yasar Zorlu; Feride Severcan
Journal:  Sci Rep       Date:  2018-01-18       Impact factor: 4.379

Review 10.  A review of novel analytical diagnostics for liquid biopsies: spectroscopic and spectrometric serum profiling of primary and secondary brain tumors.

Authors:  Katie Spalding; Ruth Board; Timothy Dawson; Michael D Jenkinson; Matthew J Baker
Journal:  Brain Behav       Date:  2016-06-29       Impact factor: 2.708

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