Literature DB >> 24241537

A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.

Klaus Bønnelykke1, Patrick Sleiman2, Kasper Nielsen3, Eskil Kreiner-Møller4, Josep M Mercader5, Danielle Belgrave6, Herman T den Dekker7, Anders Husby8, Astrid Sevelsted4, Grissel Faura-Tellez9, Li Juel Mortensen4, Lavinia Paternoster10, Richard Flaaten4, Anne Mølgaard4, David E Smart11, Philip F Thomsen12, Morten A Rasmussen13, Silvia Bonàs-Guarch5, Claus Holst14, Ellen A Nohr15, Rachita Yadav16, Michael E March17, Thomas Blicher18, Peter M Lackie19, Vincent W V Jaddoe20, Angela Simpson21, John W Holloway19, Liesbeth Duijts22, Adnan Custovic21, Donna E Davies11, David Torrents23, Ramneek Gupta16, Mads V Hollegaard24, David M Hougaard24, Hakon Hakonarson2, Hans Bisgaard25.   

Abstract

Asthma exacerbations are among the most frequent causes of hospitalization during childhood, but the underlying mechanisms are poorly understood. We performed a genome-wide association study of a specific asthma phenotype characterized by recurrent, severe exacerbations occurring between 2 and 6 years of age in a total of 1,173 cases and 2,522 controls. Cases were identified from national health registries of hospitalization, and DNA was obtained from the Danish Neonatal Screening Biobank. We identified five loci with genome-wide significant association. Four of these, GSDMB, IL33, RAD50 and IL1RL1, were previously reported as asthma susceptibility loci, but the effect sizes for these loci in our cohort were considerably larger than in the previous genome-wide association studies of asthma. We also obtained strong evidence for a new susceptibility gene, CDHR3 (encoding cadherin-related family member 3), which is highly expressed in airway epithelium. These results demonstrate the strength of applying specific phenotyping in the search for asthma susceptibility genes.

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Year:  2013        PMID: 24241537     DOI: 10.1038/ng.2830

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  53 in total

1.  Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification.

Authors:  Itai Yanai; Hila Benjamin; Michael Shmoish; Vered Chalifa-Caspi; Maxim Shklar; Ron Ophir; Arren Bar-Even; Shirley Horn-Saban; Marilyn Safran; Eytan Domany; Doron Lancet; Orit Shmueli
Journal:  Bioinformatics       Date:  2004-09-23       Impact factor: 6.937

2.  Genetic influence on the age at onset of asthma: a twin study.

Authors:  Simon Francis Thomsen; David Lorenzo Duffy; Kirsten Ohm Kyvik; Vibeke Backer
Journal:  J Allergy Clin Immunol       Date:  2010-07-31       Impact factor: 10.793

Review 3.  Genotype imputation for genome-wide association studies.

Authors:  Jonathan Marchini; Bryan Howie
Journal:  Nat Rev Genet       Date:  2010-07       Impact factor: 53.242

4.  Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.

Authors:  Daniel F Gudbjartsson; Unnur S Bjornsdottir; Eva Halapi; Anna Helgadottir; Patrick Sulem; Gudrun M Jonsdottir; Gudmar Thorleifsson; Hafdis Helgadottir; Valgerdur Steinthorsdottir; Hreinn Stefansson; Carolyn Williams; Jennie Hui; John Beilby; Nicole M Warrington; Alan James; Lyle J Palmer; Gerard H Koppelman; Andrea Heinzmann; Marcus Krueger; H Marike Boezen; Amanda Wheatley; Janine Altmuller; Hyoung Doo Shin; Soo-Taek Uh; Hyun Sub Cheong; Brynja Jonsdottir; David Gislason; Choon-Sik Park; Linda M Rasmussen; Celeste Porsbjerg; Jakob W Hansen; Vibeke Backer; Thomas Werge; Christer Janson; Ulla-Britt Jönsson; Maggie C Y Ng; Juliana Chan; Wing Yee So; Ronald Ma; Svati H Shah; Christopher B Granger; Arshed A Quyyumi; Allan I Levey; Viola Vaccarino; Muredach P Reilly; Daniel J Rader; Michael J A Williams; Andre M van Rij; Gregory T Jones; Elisabetta Trabetti; Giovanni Malerba; Pier Franco Pignatti; Attilio Boner; Lydia Pescollderungg; Domenico Girelli; Oliviero Olivieri; Nicola Martinelli; Bjorn R Ludviksson; Dora Ludviksdottir; Gudmundur I Eyjolfsson; David Arnar; Gudmundur Thorgeirsson; Klaus Deichmann; Philip J Thompson; Matthias Wjst; Ian P Hall; Dirkje S Postma; Thorarinn Gislason; Jeffrey Gulcher; Augustine Kong; Ingileif Jonsdottir; Unnur Thorsteinsdottir; Kari Stefansson
Journal:  Nat Genet       Date:  2009-02-08       Impact factor: 38.330

Review 5.  Molecular evolution of the cadherin superfamily.

Authors:  Paco Hulpiau; Frans van Roy
Journal:  Int J Biochem Cell Biol       Date:  2008-10-04       Impact factor: 5.085

Review 6.  Endotyping asthma: new insights into key pathogenic mechanisms in a complex, heterogeneous disease.

Authors:  Gary P Anderson
Journal:  Lancet       Date:  2008-09-20       Impact factor: 79.321

7.  Endotyping early childhood asthma by quantitative symptom assessment.

Authors:  Hans Bisgaard; Christian Bressen Pipper; Klaus Bønnelykke
Journal:  J Allergy Clin Immunol       Date:  2011-03-24       Impact factor: 10.793

8.  Coarse and fine particles but not ultrafine particles in urban air trigger hospital admission for asthma in children.

Authors:  Amne Iskandar; Zorana Jovanovic Andersen; Klaus Bønnelykke; Thomas Ellermann; Klaus Kaae Andersen; Hans Bisgaard
Journal:  Thorax       Date:  2011-12-09       Impact factor: 9.139

9.  Altered expression of epithelial junctional proteins in atopic asthma: possible role in inflammation.

Authors:  W I de Boer; H S Sharma; S M I Baelemans; H C Hoogsteden; B N Lambrecht; G J Braunstahl
Journal:  Can J Physiol Pharmacol       Date:  2008-03       Impact factor: 2.273

10.  HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants.

Authors:  Lucas D Ward; Manolis Kellis
Journal:  Nucleic Acids Res       Date:  2011-11-07       Impact factor: 16.971

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  195 in total

1.  A Phenome-Wide Association Study Identifies a Novel Asthma Risk Locus Near TERC.

Authors:  Dru D Claar; Emma K Larkin; Lisa Bastarache; Timothy S Blackwell; James E Loyd; Tina V Hartert; Joshua C Denny; Jonathan A Kropski
Journal:  Am J Respir Crit Care Med       Date:  2016-01-01       Impact factor: 21.405

2.  Exacerbation-Prone Asthma.

Authors:  Loren C Denlinger; Peter Heymann; Rene Lutter; James E Gern
Journal:  J Allergy Clin Immunol Pract       Date:  2019-11-22

3.  Association of Rhinovirus C Bronchiolitis and Immunoglobulin E Sensitization During Infancy With Development of Recurrent Wheeze.

Authors:  Kohei Hasegawa; Jonathan M Mansbach; Yury A Bochkov; James E Gern; Pedro A Piedra; Cindy S Bauer; Stephen J Teach; Susan Wu; Ashley F Sullivan; Carlos A Camargo
Journal:  JAMA Pediatr       Date:  2019-06-01       Impact factor: 16.193

4.  Functional genomics of CDHR3 confirms its role in HRV-C infection and childhood asthma exacerbations.

Authors:  Jamie L Everman; Satria Sajuthi; Benjamin Saef; Cydney Rios; Ari M Stoner; Mari Numata; Donglei Hu; Celeste Eng; Sam Oh; Jose Rodriguez-Santana; Eszter K Vladar; Dennis R Voelker; Esteban G Burchard; Max A Seibold
Journal:  J Allergy Clin Immunol       Date:  2019-03-29       Impact factor: 10.793

Review 5.  Lung functional development and asthma trajectories.

Authors:  Fabienne Decrue; Olga Gorlanova; Jakob Usemann; Urs Frey
Journal:  Semin Immunopathol       Date:  2020-01-27       Impact factor: 9.623

6.  Whole Genome Sequencing Identifies CRISPLD2 as a Lung Function Gene in Children With Asthma.

Authors:  Priyadarshini Kachroo; Julian Hecker; Bo L Chawes; Tarunveer S Ahluwalia; Michael H Cho; Dandi Qiao; Rachel S Kelly; Su H Chu; Yamini V Virkud; Mengna Huang; Kathleen C Barnes; Esteban G Burchard; Celeste Eng; Donglei Hu; Juan C Celedón; Michelle Daya; Albert M Levin; Hongsheng Gui; L Keoki Williams; Erick Forno; Angel C Y Mak; Lydiana Avila; Manuel E Soto-Quiros; Michelle M Cloutier; Edna Acosta-Pérez; Glorisa Canino; Klaus Bønnelykke; Hans Bisgaard; Benjamin A Raby; Christoph Lange; Scott T Weiss; Jessica A Lasky-Su
Journal:  Chest       Date:  2019-09-23       Impact factor: 9.410

7.  Cadherin-related family member 3, a childhood asthma susceptibility gene product, mediates rhinovirus C binding and replication.

Authors:  Yury A Bochkov; Kelly Watters; Shamaila Ashraf; Theodor F Griggs; Mark K Devries; Daniel J Jackson; Ann C Palmenberg; James E Gern
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-06       Impact factor: 11.205

8.  The role of IL-33/ST2, IL-4, and eosinophils on the airway hyperresponsiveness induced by Strongyloides venezuelensis in BALB/c mice.

Authors:  Emilia Souza Araujo; Cintia Aparecida de Jesus Pereira; Ana Terezinha de Moura Pereira; João Marcelo Peixoto Moreira; Michelle Carvalho de Rezende; Jailza Lima Rodrigues; Mauro Martins Teixeira; Deborah Negrão-Corrêa
Journal:  Parasitol Res       Date:  2016-04-22       Impact factor: 2.289

Review 9.  Genetics of allergy and allergic sensitization: common variants, rare mutations.

Authors:  Klaus Bønnelykke; Rachel Sparks; Johannes Waage; Joshua D Milner
Journal:  Curr Opin Immunol       Date:  2015-09-18       Impact factor: 7.486

10.  Asthma heterogeneity and severity-why is comprehensive phenotyping important?

Authors:  Wendy C Moore; Eugene R Bleecker
Journal:  Lancet Respir Med       Date:  2013-12-23       Impact factor: 30.700

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