Literature DB >> 24233792

Conditional gene-trap mutagenesis in zebrafish.

Lisette A Maddison1, Mingyu Li, Wenbiao Chen.   

Abstract

Zebrafish has become a widely used model for analysis of gene function. Several methods have been used to create mutations in this organism and thousands of mutant lines are available. However, all the conventional zebrafish mutations affect the gene in all cells at all time, making it difficult to determine tissue-specific functions. We have adopted a FlEx Trap approach to generate conditional mutations in zebrafish by gene-trap mutagenesis. Combined with appropriate Cre or Flp lines, the insertional mutants not only allow spatial- and temporal-specific gene inactivation but also permit spatial- and temporal-specific rescue of the disrupted gene. We provide experimental details on how to generate and use such mutations.

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Year:  2014        PMID: 24233792      PMCID: PMC4129463          DOI: 10.1007/978-1-62703-721-1_19

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  31 in total

1.  Methods for reverse genetic screening in zebrafish by resequencing and TILLING.

Authors:  Raman Sood; Milton A English; MaryPat Jones; James Mullikin; Duen-Mei Wang; Maria Anderson; Dongying Wu; Settara C Chandrasekharappa; Jun Yu; Jinghui Zhang; P Paul Liu
Journal:  Methods       Date:  2006-07       Impact factor: 3.608

2.  Heritable gene targeting in zebrafish using customized TALENs.

Authors:  Peng Huang; An Xiao; Mingguo Zhou; Zuoyan Zhu; Shuo Lin; Bo Zhang
Journal:  Nat Biotechnol       Date:  2011-08-05       Impact factor: 54.908

3.  Conditional control of gene function by an invertible gene trap in zebrafish.

Authors:  Terri T Ni; Jianjun Lu; Meiying Zhu; Lisette A Maddison; Kelli L Boyd; Lindsey Huskey; Bensheng Ju; Daniel Hesselson; Tao P Zhong; Patrick S Page-McCaw; Didier Y Stainier; Wenbiao Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

4.  A versatile gene trap to visualize and interrogate the function of the vertebrate proteome.

Authors:  Le A Trinh; Tatiana Hochgreb; Matthew Graham; David Wu; Frederique Ruf-Zamojski; Chathurani S Jayasena; Ankur Saxena; Rasheeda Hawk; Aidyl Gonzalez-Serricchio; Alana Dixson; Elly Chow; Constanza Gonzales; Ho-Yin Leung; Ilana Solomon; Marianne Bronner-Fraser; Sean G Megason; Scott E Fraser
Journal:  Genes Dev       Date:  2011-11-01       Impact factor: 11.361

5.  Generating conditional mutations in zebrafish using gene-trap mutagenesis.

Authors:  Lisette A Maddison; Jianjun Lu; Wenbiao Chen
Journal:  Methods Cell Biol       Date:  2011       Impact factor: 1.441

6.  Nicotine response genetics in the zebrafish.

Authors:  Andrew M Petzold; Darius Balciunas; Sridhar Sivasubbu; Karl J Clark; Victoria M Bedell; Stephanie E Westcot; Shelly R Myers; Gary L Moulder; Mark J Thomas; Stephen C Ekker
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-26       Impact factor: 11.205

7.  Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs.

Authors:  Lindsay Cade; Deepak Reyon; Woong Y Hwang; Shengdar Q Tsai; Samir Patel; Cyd Khayter; J Keith Joung; Jeffry D Sander; Randall T Peterson; Jing-Ruey Joanna Yeh
Journal:  Nucleic Acids Res       Date:  2012-06-07       Impact factor: 16.971

8.  In vivo protein trapping produces a functional expression codex of the vertebrate proteome.

Authors:  Karl J Clark; Darius Balciunas; Hans-Martin Pogoda; Yonghe Ding; Stephanie E Westcot; Victoria M Bedell; Tammy M Greenwood; Mark D Urban; Kimberly J Skuster; Andrew M Petzold; Jun Ni; Aubrey L Nielsen; Ashok Patowary; Vinod Scaria; Sridhar Sivasubbu; Xiaolei Xu; Matthias Hammerschmidt; Stephen C Ekker
Journal:  Nat Methods       Date:  2011-05-08       Impact factor: 28.547

9.  Targeted gene disruption in somatic zebrafish cells using engineered TALENs.

Authors:  Jeffry D Sander; Lindsay Cade; Cyd Khayter; Deepak Reyon; Randall T Peterson; J Keith Joung; Jing-Ruey J Yeh
Journal:  Nat Biotechnol       Date:  2011-08-05       Impact factor: 54.908

10.  Simple methods for generating and detecting locus-specific mutations induced with TALENs in the zebrafish genome.

Authors:  Timothy J Dahlem; Kazuyuki Hoshijima; Michael J Jurynec; Derrick Gunther; Colby G Starker; Alexandra S Locke; Allison M Weis; Daniel F Voytas; David Jonah Grunwald
Journal:  PLoS Genet       Date:  2012-08-16       Impact factor: 5.917

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  3 in total

1.  Dynamic structure and protein expression of the live embryonic heart captured by 2-photon light sheet microscopy and retrospective registration.

Authors:  Vikas Trivedi; Thai V Truong; Le A Trinh; Daniel B Holland; Michael Liebling; Scott E Fraser
Journal:  Biomed Opt Express       Date:  2015-05-11       Impact factor: 3.732

Review 2.  Fishing forward and reverse: Advances in zebrafish phenomics.

Authors:  Ricardo Fuentes; Joaquín Letelier; Benjamin Tajer; Leonardo E Valdivia; Mary C Mullins
Journal:  Mech Dev       Date:  2018-08-18       Impact factor: 1.882

Review 3.  Interpreting human genetic variation with in vivo zebrafish assays.

Authors:  Erica E Davis; Stephan Frangakis; Nicholas Katsanis
Journal:  Biochim Biophys Acta       Date:  2014-06-02
  3 in total

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