Literature DB >> 24233054

Epigenetic regulation by long noncoding RNAs in plants.

Jae Bok Heo, Yong-Suk Lee, Sibum Sung.   

Abstract

Many eukaryotes, including plants, produce a large number of long noncoding RNAs (lncRNAs).Growing number of lncRNAs are being reported to have regulatory roles in various developmental processes.Emerging mechanisms underlying the function of lncRNAs indicate that lncRNAs are versatile regulatory molecules. They function as potent cis- and trans-regulators of gene expression, including the formation of modular scaffolds that recruit chromatin-modifying complexes to target chromatin. LncRNAs have also been reported in plants. Here, we describe our current understanding on potential roles of lncRNA in plants.

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Year:  2013        PMID: 24233054      PMCID: PMC4049567          DOI: 10.1007/s10577-013-9392-6

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  69 in total

1.  Growth habit determination by the balance of histone methylation activities in Arabidopsis.

Authors:  Jong-Hyun Ko; Irina Mitina; Yosuke Tamada; Youbong Hyun; Yeonhee Choi; Richard M Amasino; Bosl Noh; Yoo-Sun Noh
Journal:  EMBO J       Date:  2010-08-13       Impact factor: 11.598

2.  Keeping cell identity in Arabidopsis requires PRC1 RING-finger homologs that catalyze H2A monoubiquitination.

Authors:  Fabian Bratzel; Gema López-Torrejón; Marcus Koch; Juan C Del Pozo; Myriam Calonje
Journal:  Curr Biol       Date:  2010-10-07       Impact factor: 10.834

Review 3.  Small RNAs are on the move.

Authors:  Daniel H Chitwood; Marja C P Timmermans
Journal:  Nature       Date:  2010-09-23       Impact factor: 49.962

4.  The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation.

Authors:  Xiaoyu Zhang; Sophie Germann; Bartlomiej J Blus; Sepideh Khorasanizadeh; Valerie Gaudin; Steven E Jacobsen
Journal:  Nat Struct Mol Biol       Date:  2007-08-05       Impact factor: 15.369

5.  Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.

Authors:  John L Rinn; Michael Kertesz; Jordon K Wang; Sharon L Squazzo; Xiao Xu; Samantha A Brugmann; L Henry Goodnough; Jill A Helms; Peggy J Farnham; Eran Segal; Howard Y Chang
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

6.  Phosphorylation of the PRC2 component Ezh2 is cell cycle-regulated and up-regulates its binding to ncRNA.

Authors:  Syuzo Kaneko; Gang Li; Jinsook Son; Chong-Feng Xu; Raphael Margueron; Thomas A Neubert; Danny Reinberg
Journal:  Genes Dev       Date:  2010-12-01       Impact factor: 11.361

7.  The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation.

Authors:  Vidisha Tripathi; Jonathan D Ellis; Zhen Shen; David Y Song; Qun Pan; Andrew T Watt; Susan M Freier; C Frank Bennett; Alok Sharma; Paula A Bubulya; Benjamin J Blencowe; Supriya G Prasanth; Kannanganattu V Prasanth
Journal:  Mol Cell       Date:  2010-09-24       Impact factor: 17.970

8.  ARABIDOPSIS TRITHORAX1 dynamically regulates FLOWERING LOCUS C activation via histone 3 lysine 4 trimethylation.

Authors:  Stéphane Pien; Delphine Fleury; Joshua S Mylne; Pedro Crevillen; Dirk Inzé; Zoya Avramova; Caroline Dean; Ueli Grossniklaus
Journal:  Plant Cell       Date:  2008-03-28       Impact factor: 11.277

9.  Target mimicry provides a new mechanism for regulation of microRNA activity.

Authors:  José Manuel Franco-Zorrilla; Adrián Valli; Marco Todesco; Isabel Mateos; María Isabel Puga; Ignacio Rubio-Somoza; Antonio Leyva; Detlef Weigel; Juan Antonio García; Javier Paz-Ares
Journal:  Nat Genet       Date:  2007-07-22       Impact factor: 38.330

10.  Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27.

Authors:  Franziska Turck; François Roudier; Sara Farrona; Marie-Laure Martin-Magniette; Elodie Guillaume; Nicolas Buisine; Séverine Gagnot; Robert A Martienssen; George Coupland; Vincent Colot
Journal:  PLoS Genet       Date:  2007-04-17       Impact factor: 5.917

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  46 in total

Review 1.  Renaissance in phytomedicines: promising implications of NGS technologies.

Authors:  Sonal Sharma; Neeta Shrivastava
Journal:  Planta       Date:  2016-03-22       Impact factor: 4.116

Review 2.  LncRNAs and miRNAs: potential biomarkers and therapeutic targets for prostate cancer.

Authors:  Guoxing Ma; Mingqing Tang; Yaqing Wu; Xiaoming Xu; Feng Pan; Ruian Xu
Journal:  Am J Transl Res       Date:  2016-12-15       Impact factor: 4.060

3.  The Long Intergenic Noncoding RNA (LincRNA) Landscape of the Soybean Genome.

Authors:  Agnieszka A Golicz; Mohan B Singh; Prem L Bhalla
Journal:  Plant Physiol       Date:  2017-12-28       Impact factor: 8.340

4.  Long noncoding miRNA gene represses wheat β-diketone waxes.

Authors:  Daiqing Huang; J Allan Feurtado; Mark A Smith; Leah K Flatman; Chushin Koh; Adrian J Cutler
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-28       Impact factor: 11.205

5.  A natural antisense RNA improves chrysanthemum cold tolerance by regulating the transcription factor DgTCP1.

Authors:  Xin Li; Qing Yang; Xiaoqin Liao; Yuchen Tian; Fan Zhang; Lei Zhang; Qinglin Liu
Journal:  Plant Physiol       Date:  2022-08-29       Impact factor: 8.005

6.  Identification and Characterization of Long Non-coding RNA in Tomato Roots Under Salt Stress.

Authors:  Ning Li; Zhongyu Wang; Baike Wang; Juan Wang; Ruiqiang Xu; Tao Yang; Shaoyong Huang; Huan Wang; Qinghui Yu
Journal:  Front Plant Sci       Date:  2022-07-04       Impact factor: 6.627

7.  Genome-wide identification and characterization of novel lncRNAs in Populus under nitrogen deficiency.

Authors:  Min Chen; Chenlu Wang; Hai Bao; Hui Chen; Yanwei Wang
Journal:  Mol Genet Genomics       Date:  2016-05-02       Impact factor: 3.291

8.  PacBio single-molecule long-read sequencing shed new light on the transcripts and splice isoforms of the perennial ryegrass.

Authors:  Lijuan Xie; Ke Teng; Penghui Tan; Yuehui Chao; Yinruizhi Li; Weier Guo; Liebao Han
Journal:  Mol Genet Genomics       Date:  2020-01-01       Impact factor: 3.291

Review 9.  Interplay between miRNAs and lncRNAs: Mode of action and biological roles in plant development and stress adaptation.

Authors:  Xiangxiang Meng; Aixia Li; Bin Yu; Shengjun Li
Journal:  Comput Struct Biotechnol J       Date:  2021-04-27       Impact factor: 7.271

10.  RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening.

Authors:  Benzhong Zhu; Yongfang Yang; Ran Li; Daqi Fu; Liwei Wen; Yunbo Luo; Hongliang Zhu
Journal:  J Exp Bot       Date:  2015-05-06       Impact factor: 6.992

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