Literature DB >> 24229216

Optimal mapping of x-ray laser diffraction patterns into three dimensions using routing algorithms.

Stephan Kassemeyer1, Aliakbar Jafarpour, Lukas Lomb, Jan Steinbrener, Andrew V Martin, Ilme Schlichting.   

Abstract

Coherent diffractive imaging with x-ray free-electron lasers (XFEL) promises high-resolution structure determination of noncrystalline objects. Randomly oriented particles are exposed to XFEL pulses for acquisition of two-dimensional (2D) diffraction snapshots. The knowledge of their orientations enables 3D imaging by multiview reconstruction, combining 2D diffraction snapshots in different orientations. Here we introduce a globally optimal algorithm that can infer these orientations. We apply it to experimental XFEL data of nanoparticles and so determine their 3D electron density.

Mesh:

Year:  2013        PMID: 24229216     DOI: 10.1103/PhysRevE.88.042710

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  14 in total

1.  The correlation of single-particle diffraction patterns as a continuous function of particle orientation.

Authors:  Andrew V Martin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

Review 2.  Methods and application of coherent X-ray diffraction imaging of noncrystalline particles.

Authors:  Masayoshi Nakasako; Amane Kobayashi; Yuki Takayama; Kenta Asakura; Mao Oide; Koji Okajima; Tomotaka Oroguchi; Masaki Yamamoto
Journal:  Biophys Rev       Date:  2020-03-16

3.  Determination of crystallographic intensities from sparse data.

Authors:  Kartik Ayyer; Hugh T Philipp; Mark W Tate; Jennifer L Wierman; Veit Elser; Sol M Gruner
Journal:  IUCrJ       Date:  2015-01-01       Impact factor: 4.769

4.  A comprehensive simulation framework for imaging single particles and biomolecules at the European X-ray Free-Electron Laser.

Authors:  Chun Hong Yoon; Mikhail V Yurkov; Evgeny A Schneidmiller; Liubov Samoylova; Alexey Buzmakov; Zoltan Jurek; Beata Ziaja; Robin Santra; N Duane Loh; Thomas Tschentscher; Adrian P Mancuso
Journal:  Sci Rep       Date:  2016-04-25       Impact factor: 4.379

5.  Single-particle structure determination by X-ray free-electron lasers: Possibilities and challenges.

Authors:  A Hosseinizadeh; A Dashti; P Schwander; R Fung; A Ourmazd
Journal:  Struct Dyn       Date:  2015-04-30       Impact factor: 2.920

6.  Merging single-shot XFEL diffraction data from inorganic nanoparticles: a new approach to size and orientation determination.

Authors:  Xuanxuan Li; John C H Spence; Brenda G Hogue; Haiguang Liu
Journal:  IUCrJ       Date:  2017-09-22       Impact factor: 4.769

Review 7.  XFELs for structure and dynamics in biology.

Authors:  J C H Spence
Journal:  IUCrJ       Date:  2017-05-10       Impact factor: 4.769

8.  Single-molecule imaging with longer X-ray laser pulses.

Authors:  Andrew V Martin; Justine K Corso; Carl Caleman; Nicusor Timneanu; Harry M Quiney
Journal:  IUCrJ       Date:  2015-10-21       Impact factor: 4.769

9.  Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods.

Authors:  Shufen Ma; Haiguang Liu
Journal:  J Appl Crystallogr       Date:  2016-03-18       Impact factor: 3.304

10.  CFEL-ASG Software Suite (CASS): usage for free-electron laser experiments with biological focus.

Authors:  Lutz Foucar
Journal:  J Appl Crystallogr       Date:  2016-06-23       Impact factor: 3.304

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