Literature DB >> 24227028

Hierarchical cluster analysis as a tool to manage variation in germplasm collections.

J P Peeters1, J A Martinelli.   

Abstract

The potential of using hierarchical cluster analysis to classify entries from a germplasm collection according to their degree of similarity was assessed. Results suggest that similarity is generally greatest among individual entries by country of origin and that hierarchical cluster analysis could be used as a tool to classify entries from germplasm collections according to their respective gene pools, even when no passport data are available. Based on this technique, it is also shown that the segregative potential of entries can be estimated.

Year:  1989        PMID: 24227028     DOI: 10.1007/BF00299751

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  5 in total

1.  Genome reshuffling of the copia element in an inbred line of Drosophila melanogaster.

Authors:  C Biémont; A Aouar; C Arnault
Journal:  Nature       Date:  1987 Oct 22-28       Impact factor: 49.962

2.  Microcomputers and phylogenetic analysis.

Authors:  W L Fink
Journal:  Science       Date:  1986-11-28       Impact factor: 47.728

3.  Statistical properties of molecular tree construction methods under the neutral mutation model.

Authors:  Y Tateno; F Tajima
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

4.  EVALUATION OF THE RESTRICTED MAXIMUM-LIKELIHOOD METHOD FOR ESTIMATING PHYLOGENETIC TREES USING SIMULATED ALLELE-FREQUENCY DATA.

Authors:  F James Rohlf; Michael C Wooten
Journal:  Evolution       Date:  1988-05       Impact factor: 3.694

5.  Multivariate analysis and the choice of parents for hybridization in Okra (Abelmoschus esculentus (L.) Moench).

Authors:  O J Ariyo
Journal:  Theor Appl Genet       Date:  1987-07       Impact factor: 5.699

  5 in total
  11 in total

1.  Relationships among tetraploid wheat (Triticum turgidum L.) landrace populations revealed by isozyme markers and agronomic traits.

Authors:  S Tsegaye; T Tesemma; G Belay
Journal:  Theor Appl Genet       Date:  1996-09       Impact factor: 5.699

2.  The use of ecogeographical data in the exploitation of variation from gene banks.

Authors:  J P Peeters; H G Wilkes; N W Galwey
Journal:  Theor Appl Genet       Date:  1990-07       Impact factor: 5.699

3.  Evaluation of five strategies for obtaining a core subset from a large genetic resource collection of durum wheat.

Authors:  P L Zeuli; C O Qualset
Journal:  Theor Appl Genet       Date:  1993-11       Impact factor: 5.699

4.  IBPGR morphological descriptors - their relevance in determining patterns within a diverse spring barley germplasm collection.

Authors:  R J Cross; A G Fautrier; D L McNeil
Journal:  Theor Appl Genet       Date:  1992-12       Impact factor: 5.699

5.  Hierarchical clustering of perennial ryegrass populations with geographic contiguity constraint.

Authors:  G Charmet; F Balfourier; P Monestiez
Journal:  Theor Appl Genet       Date:  1994-04       Impact factor: 5.699

6.  Determination of genetic structure of germplasm collections: are traditional hierarchical clustering methods appropriate for molecular marker data?

Authors:  T L Odong; J van Heerwaarden; J Jansen; T J L van Hintum; F A van Eeuwijk
Journal:  Theor Appl Genet       Date:  2011-04-07       Impact factor: 5.699

7.  A core collection and mini core collection of Oryza sativa L. in China.

Authors:  Hongliang Zhang; Dongling Zhang; Meixing Wang; Junli Sun; Yongwen Qi; Jinjie Li; Xinghua Wei; Longzhi Han; Zongen Qiu; Shengxiang Tang; Zichao Li
Journal:  Theor Appl Genet       Date:  2010-08-18       Impact factor: 5.699

8.  Molecular characterization and genetic structure of Quercus acutissima germplasm in China using microsatellites.

Authors:  Yuanyan Y Zhang; Yanming M Fang; Mukui K Yu; Xuexia X Li; Tao Xia
Journal:  Mol Biol Rep       Date:  2013-03-05       Impact factor: 2.316

9.  Hierarchical clustering of 54 races and strains of the mulberry silkworm, Bombyx mori L: Significance of biochemical parameters.

Authors:  S N Chatterjee; R K Datta
Journal:  Theor Appl Genet       Date:  1992-12       Impact factor: 5.699

10.  Analysis of genetic diversity and population structure of rice germplasm from north-eastern region of India and development of a core germplasm set.

Authors:  Debjani Roy Choudhury; Nivedita Singh; Amit Kumar Singh; Sundeep Kumar; Kalyani Srinivasan; R K Tyagi; Altaf Ahmad; N K Singh; Rakesh Singh
Journal:  PLoS One       Date:  2014-11-20       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.