Literature DB >> 24190254

Evaluation of five strategies for obtaining a core subset from a large genetic resource collection of durum wheat.

P L Zeuli1, C O Qualset.   

Abstract

The use of plant genetic resources contained in a large collection may be enhanced by specifying subsamples, called core samples. Five strategies for selecting a core sample from a collection of 3000 durum wheat accessions were applied and evaluated using four qualitative and eight quantitative spike characters. Each of the following strategies generated about 500 accessions for the core sample: random, random-systematic according to chronology of entry of the accessions into the collection, stratified by countryof-origin, stratified by log frequency by country-of-origin, and stratified by canonical variables. The first three strategies produced samples representative of the whole collection, but the remaining two produced the desired effect of increasing frequencies from less-represented countries-of-origin for several characters. The stratified canonical sample increased phenotypic variances. The quality of core samples is dependent upon good passport and evaluation data to partition the collection. The multivariate approach is extremely useful, but requires considerable data from the whole collection. Ecogeographic origin may be used in the absence of evaluation data on several characters to select useful core samples.

Entities:  

Year:  1993        PMID: 24190254     DOI: 10.1007/BF01184915

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  2 in total

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Authors:  M KIMURA; J F CROW
Journal:  Genetics       Date:  1964-04       Impact factor: 4.562

2.  Hierarchical cluster analysis as a tool to manage variation in germplasm collections.

Authors:  J P Peeters; J A Martinelli
Journal:  Theor Appl Genet       Date:  1989-07       Impact factor: 5.699

  2 in total
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1.  A core collection and mini core collection of Oryza sativa L. in China.

Authors:  Hongliang Zhang; Dongling Zhang; Meixing Wang; Junli Sun; Yongwen Qi; Jinjie Li; Xinghua Wei; Longzhi Han; Zongen Qiu; Shengxiang Tang; Zichao Li
Journal:  Theor Appl Genet       Date:  2010-08-18       Impact factor: 5.699

Review 2.  Quality of core collections for effective utilisation of genetic resources review, discussion and interpretation.

Authors:  T L Odong; J Jansen; F A van Eeuwijk; T J L van Hintum
Journal:  Theor Appl Genet       Date:  2012-09-15       Impact factor: 5.699

3.  A worldwide bread wheat core collection arrayed in a 384-well plate.

Authors:  François Balfourier; Valérie Roussel; Pjotr Strelchenko; Florence Exbrayat-Vinson; Pierre Sourdille; Gilles Boutet; Jean Koenig; Catherine Ravel; Olga Mitrofanova; Michel Beckert; Gilles Charmet
Journal:  Theor Appl Genet       Date:  2007-02-21       Impact factor: 5.574

4.  Molecular diversity, population structure, and linkage disequilibrium in a worldwide collection of tobacco (Nicotiana tabacum L.) germplasm.

Authors:  Agostino Fricano; Nicolas Bakaher; Marcello Del Corvo; Pietro Piffanelli; Paolo Donini; Alessandra Stella; Nikolai V Ivanov; Carlo Pozzi
Journal:  BMC Genet       Date:  2012-03-21       Impact factor: 2.797

5.  Developing a common bean core collection suitable for association mapping studies.

Authors:  Juliana Morini Küpper Cardoso Perseguini; Gliciane Micaele Borges Silva; João Ricardo Bachega Feijó Rosa; Rodrigo Gazaffi; Jéssica Fernanda Marçal; Sérgio Augusto Morais Carbonell; Alisson Fernando Chiorato; Maria Imaculada Zucchi; Antonio Augusto Franco Garcia; Luciana Lasry Benchimol-Reis
Journal:  Genet Mol Biol       Date:  2014-03-17       Impact factor: 1.771

  5 in total

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