Literature DB >> 24219346

Uncovering the selection criteria for the emergence of multi-building-block replicators from dynamic combinatorial libraries.

Morteza Malakoutikhah1, Jérôme J-P Peyralans, Mathieu Colomb-Delsuc, Hugo Fanlo-Virgós, Marc C A Stuart, Sijbren Otto.   

Abstract

A family of self-replicating macrocycles was developed using dynamic combinatorial chemistry. Replication is driven by self-assembly of the replicators into fibrils and relies critically on mechanically induced fibril fragmentation. Analysis of separate dynamic combinatorial libraries made from one of six peptide-functionalized building blocks of different hydrophobicity revealed two selection criteria that govern the emergence of replicators from these systems. First, the replicators need to have a critical macrocycle size that endows them with sufficient multivalency to enable their self-assembly into fibrils. Second, efficient replication occurs only for library members that are of low abundance in the absence of a replication pathway. This work has led to spontaneous emergence of replicators with unrivalled structural complexity, being built from up to eight identical subunits and reaching a MW of up to 5.6 kDa. The insights obtained in this work provide valuable guidance that should facilitate future discovery of new complex self-replicating molecules. They may also assist in the development of new self-synthesizing materials, where self-assembly drives the synthesis of the very molecules that self-assemble. To illustrate the potential of this concept, the present system enables access to self-assembling materials made from self-synthesizing macrocycles with tunable ring size ranging from trimers to octamers.

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Year:  2013        PMID: 24219346     DOI: 10.1021/ja4067805

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  14 in total

1.  Diversification of self-replicating molecules.

Authors:  Jan W Sadownik; Elio Mattia; Piotr Nowak; Sijbren Otto
Journal:  Nat Chem       Date:  2016-01-04       Impact factor: 24.427

2.  Exponential self-replication enabled through a fibre elongation/breakage mechanism.

Authors:  Mathieu Colomb-Delsuc; Elio Mattia; Jan W Sadownik; Sijbren Otto
Journal:  Nat Commun       Date:  2015-06-17       Impact factor: 14.919

3.  Gelation-driven Dynamic Systemic Resolution: in situ Generation and Self-Selection of an Organogelator.

Authors:  Lei Hu; Yang Zhang; Olof Ramström
Journal:  Sci Rep       Date:  2015-06-16       Impact factor: 4.379

Review 4.  Grip on complexity in chemical reaction networks.

Authors:  Albert S Y Wong; Wilhelm T S Huck
Journal:  Beilstein J Org Chem       Date:  2017-07-28       Impact factor: 2.883

Review 5.  Towards open-ended evolution in self-replicating molecular systems.

Authors:  Herman Duim; Sijbren Otto
Journal:  Beilstein J Org Chem       Date:  2017-06-21       Impact factor: 2.883

6.  Self-Assembly Can Direct Dynamic Covalent Bond Formation toward Diversity or Specificity.

Authors:  Dávid Komáromy; Marc C A Stuart; Guillermo Monreal Santiago; Meniz Tezcan; Victor V Krasnikov; Sijbren Otto
Journal:  J Am Chem Soc       Date:  2017-04-24       Impact factor: 15.419

7.  Multiple competing pathways for chemical reaction: drastic reaction shortcut for the self-catalytic double-helix formation of helicene oligomers.

Authors:  Yo Kushida; Nozomi Saito; Masanori Shigeno; Masahiko Yamaguchi
Journal:  Chem Sci       Date:  2016-10-14       Impact factor: 9.825

8.  Emergence of a New Self-Replicator from a Dynamic Combinatorial Library Requires a Specific Pre-Existing Replicator.

Authors:  Yigit Altay; Meniz Tezcan; Sijbren Otto
Journal:  J Am Chem Soc       Date:  2017-09-22       Impact factor: 15.419

9.  Spontaneous Emergence of Self-Replicating Molecules Containing Nucleobases and Amino Acids.

Authors:  Bin Liu; Charalampos G Pappas; Jim Ottelé; Gaël Schaeffer; Christoph Jurissek; Priscilla F Pieters; Meniz Altay; Ivana Marić; Marc C A Stuart; Sijbren Otto
Journal:  J Am Chem Soc       Date:  2020-02-18       Impact factor: 15.419

10.  Structural and Spectroscopic Properties of Assemblies of Self-Replicating Peptide Macrocycles.

Authors:  Pim W J M Frederix; Julien Idé; Yigit Altay; Gaël Schaeffer; Mathieu Surin; David Beljonne; Anna S Bondarenko; Thomas L C Jansen; Sijbren Otto; Siewert J Marrink
Journal:  ACS Nano       Date:  2017-07-21       Impact factor: 15.881

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