Literature DB >> 24218244

Genetic strategies for dissecting complex traits in biomass willows (Salix spp.).

Steven J Hanley1, Angela Karp2.   

Abstract

Willows are highly diverse catkin-bearing trees and shrubs of the genus Salix. They occur in many growth forms, from tall trees to creeping alpines, and successfully occupy a wide variety of ecological niches. Shrubby willows (sub-genus Vetrix) have many characteristics that render them suited to cultivation in much faster growth cycles than conventional forestry. They respond well to coppicing, can be propagated vegetatively as cuttings and achieve rapid growth with low fertilizer inputs. As a result, willows grown as short rotation coppice are now among the leading commercially grown biomass crops in temperate regions. However, although willows have a long history of cultivation for traditional uses, their industrial use is relatively recent and, compared with major arable crops, they are largely undomesticated. Breeding programmes initiated to improve willow as a biomass crop achieved a doubling of yields within a period of <15 years. These advances were made by selecting for stem characteristics (height and diameter) and coppicing response (shoot number and shoot vigour), as well as resistance to pests, diseases and environmental stress, with little or no knowledge of the genetic basis of these traits. Genetics and genomics, combined with extensive phenotyping, have substantially improved our understanding of the basis of biomass traits in willow for more targeted breeding via marker-assisted selection. Here, we present the strategy we have adopted in which a genetic-based approach was used to dissect complex traits into more defined components for molecular breeding and gene discovery.
© The Author 2013. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Salix; bioenergy; breeding; genetics; genomics; quantitative trait loci

Mesh:

Year:  2013        PMID: 24218244     DOI: 10.1093/treephys/tpt089

Source DB:  PubMed          Journal:  Tree Physiol        ISSN: 0829-318X            Impact factor:   4.196


  16 in total

1.  Joint linkage and association mapping of complex traits in shrub willow (Salix purpurea L.).

Authors:  Craig H Carlson; Fred E Gouker; Chase R Crowell; Luke Evans; Stephen P DiFazio; Christine D Smart; Lawrence B Smart
Journal:  Ann Bot       Date:  2019-10-29       Impact factor: 4.357

2.  An efficient high throughput metabotyping platform for screening of biomass willows.

Authors:  Delia I Corol; Claudia Harflett; Michael H Beale; Jane L Ward
Journal:  Metabolites       Date:  2014-10-28

3.  Functional screening of willow alleles in Arabidopsis combined with QTL mapping in willow (Salix) identifies SxMAX4 as a coppicing response gene.

Authors:  Jemma Salmon; Sally P Ward; Steven J Hanley; Ottoline Leyser; Angela Karp
Journal:  Plant Biotechnol J       Date:  2014-01-07       Impact factor: 9.803

4.  De novo transcriptome assembly, development of EST-SSR markers and population genetic analyses for the desert biomass willow, Salix psammophila.

Authors:  Huixia Jia; Haifeng Yang; Pei Sun; Jianbo Li; Jin Zhang; Yinghua Guo; Xiaojiao Han; Guosheng Zhang; Mengzhu Lu; Jianjun Hu
Journal:  Sci Rep       Date:  2016-12-20       Impact factor: 4.379

5.  Dominance and Sexual Dimorphism Pervade the Salix purpurea L. Transcriptome.

Authors:  Craig H Carlson; Yongwook Choi; Agnes P Chan; Michelle J Serapiglia; Christopher D Town; Lawrence B Smart
Journal:  Genome Biol Evol       Date:  2017-09-01       Impact factor: 3.416

6.  Identification of Quantitative Trait Loci Conditioning the Main Biomass Yield Components and Resistance to Melampsora spp. in Salix viminalis × Salix schwerinii Hybrids.

Authors:  Paweł Sulima; Jerzy A Przyborowski; Anna Kuszewska; Dariusz Załuski; Małgorzata Jędryczka; Witold Irzykowski
Journal:  Int J Mol Sci       Date:  2017-03-22       Impact factor: 5.923

7.  The heat shock factor gene family in Salix suchowensis: a genome-wide survey and expression profiling during development and abiotic stresses.

Authors:  Jin Zhang; Yu Li; Hui-Xia Jia; Jian-Bo Li; Juan Huang; Meng-Zhu Lu; Jian-Jun Hu
Journal:  Front Plant Sci       Date:  2015-09-16       Impact factor: 5.753

8.  Association mapping in Salix viminalis L. (Salicaceae) - identification of candidate genes associated with growth and phenology.

Authors:  Henrik R Hallingbäck; Johan Fogelqvist; Stephen J Powers; Juan Turrion-Gomez; Rachel Rossiter; Joanna Amey; Tom Martin; Martin Weih; Niclas Gyllenstrand; Angela Karp; Ulf Lagercrantz; Steven J Hanley; Sofia Berlin; Ann-Christin Rönnberg-Wästljung
Journal:  Glob Change Biol Bioenergy       Date:  2015-07-29       Impact factor: 4.745

9.  Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar.

Authors:  John Clifton-Brown; Antoine Harfouche; Michael D Casler; Huw Dylan Jones; William J Macalpine; Donal Murphy-Bokern; Lawrence B Smart; Anneli Adler; Chris Ashman; Danny Awty-Carroll; Catherine Bastien; Sebastian Bopper; Vasile Botnari; Maryse Brancourt-Hulmel; Zhiyong Chen; Lindsay V Clark; Salvatore Cosentino; Sue Dalton; Chris Davey; Oene Dolstra; Iain Donnison; Richard Flavell; Joerg Greef; Steve Hanley; Astley Hastings; Magnus Hertzberg; Tsai-Wen Hsu; Lin S Huang; Antonella Iurato; Elaine Jensen; Xiaoli Jin; Uffe Jørgensen; Andreas Kiesel; Do-Soon Kim; Jianxiu Liu; Jon P McCalmont; Bernard G McMahon; Michal Mos; Paul Robson; Erik J Sacks; Anatolii Sandu; Giovanni Scalici; Kai Schwarz; Danilo Scordia; Reza Shafiei; Ian Shield; Gancho Slavov; Brian J Stanton; Kankshita Swaminathan; Gail Taylor; Andres F Torres; Luisa M Trindade; Timothy Tschaplinski; Gerald A Tuskan; Toshihiko Yamada; Chang Yeon Yu; Ronald S Zalesny; Junqin Zong; Iris Lewandowski
Journal:  Glob Change Biol Bioenergy       Date:  2018-10-23       Impact factor: 4.745

10.  Genome-Wide Characterization of the sHsp Gene Family in Salix suchowensis Reveals Its Functions under Different Abiotic Stresses.

Authors:  Jianbo Li; Jin Zhang; Huixia Jia; Zhiqiang Yue; Mengzhu Lu; Xuebing Xin; Jianjun Hu
Journal:  Int J Mol Sci       Date:  2018-10-19       Impact factor: 5.923

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