Literature DB >> 24212472

DyP-type peroxidases: a promising and versatile class of enzymes.

Dana I Colpa1, Marco W Fraaije, Edwin van Bloois.   

Abstract

DyP peroxidases comprise a novel superfamily of heme-containing peroxidases, which is unrelated to the superfamilies of plant and animal peroxidases. These enzymes have so far been identified in the genomes of fungi, bacteria, as well as archaea, although their physiological function is still unclear. DyPs are bifunctional enzymes displaying not only oxidative activity but also hydrolytic activity. Moreover, these enzymes are able to oxidize a variety of organic compounds of which some are poorly converted by established peroxidases, including dyes, β-carotene, and aromatic sulfides. Interestingly, accumulating evidence shows that microbial DyP peroxidases play a key role in the degradation of lignin. Owing to their unique properties, these enzymes are potentially interesting for a variety of biocatalytic applications. In this review, we deal with the biochemical and structural features of DyP-type peroxidases as well as their promising biotechnological potential.

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Year:  2013        PMID: 24212472     DOI: 10.1007/s10295-013-1371-6

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  49 in total

1.  Structural basis of enzyme encapsulation into a bacterial nanocompartment.

Authors:  Markus Sutter; Daniel Boehringer; Sascha Gutmann; Susanne Günther; David Prangishvili; Martin J Loessner; Karl O Stetter; Eilika Weber-Ban; Nenad Ban
Journal:  Nat Struct Mol Biol       Date:  2008-09       Impact factor: 15.369

2.  The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue.

Authors:  Toru Yoshida; Hideaki Tsuge; Hiroki Konno; Toru Hisabori; Yasushi Sugano
Journal:  FEBS J       Date:  2011-05-31       Impact factor: 5.542

3.  Cloning and expression of a toxin gene from Pseudomonas fluorescens GcM5-1A.

Authors:  Lingying Kong; Daosen Guo; Shiyi Zhou; Xinlei Yu; Guixue Hou; Ronggui Li; Boguang Zhao
Journal:  Arch Microbiol       Date:  2010-05-22       Impact factor: 2.552

4.  Effects of peroxidase substrates on the Amplex red/peroxidase assay: antioxidant properties of anthracyclines.

Authors:  Krzysztof J Reszka; Brett A Wagner; C Patrick Burns; Bradley E Britigan
Journal:  Anal Biochem       Date:  2005-07-15       Impact factor: 3.365

Review 5.  Recent advances in azo dye degrading enzyme research.

Authors:  Huizhong Chen
Journal:  Curr Protein Pept Sci       Date:  2006-04       Impact factor: 3.272

6.  Radical formation on a conserved tyrosine residue is crucial for DyP activity.

Authors:  Eric Strittmatter; Sabrina Wachter; Christiane Liers; René Ullrich; Martin Hofrichter; Dietmar A Plattner; Klaus Piontek
Journal:  Arch Biochem Biophys       Date:  2013-07-19       Impact factor: 4.013

Review 7.  Horseradish peroxidase: a modern view of a classic enzyme.

Authors:  Nigel C Veitch
Journal:  Phytochemistry       Date:  2004-02       Impact factor: 4.072

8.  Substrate oxidation by dye-decolorizing peroxidases (DyPs) from wood- and litter-degrading agaricomycetes compared to other fungal and plant heme-peroxidases.

Authors:  Christiane Liers; Marek J Pecyna; Harald Kellner; Anja Worrich; Holger Zorn; Kari T Steffen; Martin Hofrichter; René Ullrich
Journal:  Appl Microbiol Biotechnol       Date:  2012-10-31       Impact factor: 4.813

9.  Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1.

Authors:  Joseph N Roberts; Rahul Singh; Jason C Grigg; Michael E P Murphy; Timothy D H Bugg; Lindsay D Eltis
Journal:  Biochemistry       Date:  2011-05-19       Impact factor: 3.162

10.  A robust and extracellular heme-containing peroxidase from Thermobifida fusca as prototype of a bacterial peroxidase superfamily.

Authors:  Edwin van Bloois; Daniel E Torres Pazmiño; Remko T Winter; Marco W Fraaije
Journal:  Appl Microbiol Biotechnol       Date:  2009-12-05       Impact factor: 4.813

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  44 in total

1.  Identification of Surface-Exposed Protein Radicals and A Substrate Oxidation Site in A-Class Dye-Decolorizing Peroxidase from Thermomonospora curvata.

Authors:  Ruben Shrestha; Xuejie Chen; Kasra X Ramyar; Zahra Hayati; Eric A Carlson; Stefan H Bossmann; Likai Song; Brian V Geisbrecht; Ping Li
Journal:  ACS Catal       Date:  2016-10-12       Impact factor: 13.084

2.  Characterization of Dye-decolorizing Peroxidase (DyP) from Thermomonospora curvata Reveals Unique Catalytic Properties of A-type DyPs.

Authors:  Chao Chen; Ruben Shrestha; Kaimin Jia; Philip F Gao; Brian V Geisbrecht; Stefan H Bossmann; Jishu Shi; Ping Li
Journal:  J Biol Chem       Date:  2015-07-23       Impact factor: 5.157

Review 3.  Applications of Microbial Enzymes in Food Industry.

Authors:  Sindhu Raveendran; Binod Parameswaran; Sabeela Beevi Ummalyma; Amith Abraham; Anil Kuruvilla Mathew; Aravind Madhavan; Sharrel Rebello; Ashok Pandey
Journal:  Food Technol Biotechnol       Date:  2018-03       Impact factor: 3.918

4.  Mechanistic Insights into Dye-Decolorizing Peroxidase Revealed by Solvent Isotope and Viscosity Effects.

Authors:  Ruben Shrestha; Gaochao Huang; David A Meekins; Brian V Geisbrecht; Ping Li
Journal:  ACS Catal       Date:  2017-08-09       Impact factor: 13.084

5.  Enantioselective Synthesis of Dilignol Model Compounds and Their Stereodiscrimination Study with a Dye-Decolorizing Peroxidase.

Authors:  Gaochao Huang; Ruben Shrestha; Kaimin Jia; Brian V Geisbrecht; Ping Li
Journal:  Org Lett       Date:  2017-03-22       Impact factor: 6.005

6.  Progress and obstacles in the production and application of recombinant lignin-degrading peroxidases.

Authors:  Camilla Lambertz; Selin Ece; Rainer Fischer; Ulrich Commandeur
Journal:  Bioengineered       Date:  2016-06-13       Impact factor: 3.269

7.  Revealing two important tryptophan residues with completely different roles in a dye-decolorizing peroxidase from Irpex lacteus F17.

Authors:  Liuqing Li; Tao Wang; Taohua Chen; Wenhan Huang; Yinliang Zhang; Rong Jia; Chao He
Journal:  Biotechnol Biofuels       Date:  2021-05-31       Impact factor: 6.040

8.  Characterization of a Dye-Decolorizing Peroxidase from Irpex lacteus Expressed in Escherichia coli: An Enzyme with Wide Substrate Specificity Able to Transform Lignosulfonates.

Authors:  Laura Isabel de Eugenio; Rosa Peces-Pérez; Dolores Linde; Alicia Prieto; Jorge Barriuso; Francisco Javier Ruiz-Dueñas; María Jesús Martínez
Journal:  J Fungi (Basel)       Date:  2021-04-22

9.  Exploring the Diversity of Fungal DyPs in Mangrove Soils to Produce and Characterize Novel Biocatalysts.

Authors:  Amal Ben Ayed; Geoffroy Saint-Genis; Laurent Vallon; Dolores Linde; Annick Turbé-Doan; Mireille Haon; Marianne Daou; Emmanuel Bertrand; Craig B Faulds; Giuliano Sciara; Martino Adamo; Roland Marmeisse; Sophie Comtet-Marre; Pierre Peyret; Danis Abrouk; Francisco J Ruiz-Dueñas; Cyril Marchand; Mylène Hugoni; Patricia Luis; Tahar Mechichi; Eric Record
Journal:  J Fungi (Basel)       Date:  2021-04-21

10.  Efficient Degradation of 2-Mercaptobenzothiazole and Other Emerging Pollutants by Recombinant Bacterial Dye-Decolorizing Peroxidases.

Authors:  Aya Alsadik; Khawlah Athamneh; Ahmed F Yousef; Iltaf Shah; Syed Salman Ashraf
Journal:  Biomolecules       Date:  2021-04-29
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