Literature DB >> 23876237

Radical formation on a conserved tyrosine residue is crucial for DyP activity.

Eric Strittmatter1, Sabrina Wachter, Christiane Liers, René Ullrich, Martin Hofrichter, Dietmar A Plattner, Klaus Piontek.   

Abstract

Dye-decolorizing peroxidases (DyPs) are able to cleave bulky anthraquinone dyes. The recently published crystal structure of AauDyPI reveals that a direct oxidation in the distal heme cavity can be excluded for most DyP substrates. It is shown that a surface-exposed tyrosine residue acts as a substrate interaction site for bulky substrates. This amino acid is conserved in eucaryotic DyPs but is missing in the structurally related chlorite dismutases (Clds). Dye-decolorizing peroxidases of procaryotic origin equally possess a conserved tyrosine in the same region of the polypeptide albeit not at the homologous position.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Catalysis; Dye-decolorizing peroxidases (DyPs); Enzyme assay; Heme; Mass spectrometry; PROLI/NO; Spin trapping; Tryptophan; Tyrosine

Mesh:

Substances:

Year:  2013        PMID: 23876237     DOI: 10.1016/j.abb.2013.07.007

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  10 in total

1.  Identification of Surface-Exposed Protein Radicals and A Substrate Oxidation Site in A-Class Dye-Decolorizing Peroxidase from Thermomonospora curvata.

Authors:  Ruben Shrestha; Xuejie Chen; Kasra X Ramyar; Zahra Hayati; Eric A Carlson; Stefan H Bossmann; Likai Song; Brian V Geisbrecht; Ping Li
Journal:  ACS Catal       Date:  2016-10-12       Impact factor: 13.084

Review 2.  DyP-type peroxidases: a promising and versatile class of enzymes.

Authors:  Dana I Colpa; Marco W Fraaije; Edwin van Bloois
Journal:  J Ind Microbiol Biotechnol       Date:  2013-11-09       Impact factor: 3.346

3.  Mutational and structural analysis of an ancestral fungal dye-decolorizing peroxidase.

Authors:  Ulises A Zitare; Mohamed H Habib; Henriette Rozeboom; Maria L Mascotti; Smilja Todorovic; Marco W Fraaije
Journal:  FEBS J       Date:  2021-01-08       Impact factor: 5.542

Review 4.  Understanding molecular enzymology of porphyrin-binding α + β barrel proteins - One fold, multiple functions.

Authors:  Stefan Hofbauer; Vera Pfanzagl; Hanna Michlits; Daniel Schmidt; Christian Obinger; Paul G Furtmüller
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2020-09-04       Impact factor: 3.036

5.  Direct Electrochemical Generation of Catalytically Competent Oxyferryl Species of Classes I and P Dye Decolorizing Peroxidases.

Authors:  Magalí F Scocozza; Lígia O Martins; Daniel H Murgida
Journal:  Int J Mol Sci       Date:  2021-11-20       Impact factor: 5.923

Review 6.  DyP-Type Peroxidases: Recent Advances and Perspectives.

Authors:  Yasushi Sugano; Toru Yoshida
Journal:  Int J Mol Sci       Date:  2021-05-24       Impact factor: 5.923

7.  Structural and Biochemical Characterization of a Dye-Decolorizing Peroxidase from Dictyostelium discoideum.

Authors:  Amrita Rai; Johann P Klare; Patrick Y A Reinke; Felix Englmaier; Jörg Fohrer; Roman Fedorov; Manuel H Taft; Igor Chizhov; Ute Curth; Oliver Plettenburg; Dietmar J Manstein
Journal:  Int J Mol Sci       Date:  2021-06-10       Impact factor: 5.923

8.  Catalytic surface radical in dye-decolorizing peroxidase: a computational, spectroscopic and site-directed mutagenesis study.

Authors:  Dolores Linde; Rebecca Pogni; Marina Cañellas; Fátima Lucas; Victor Guallar; Maria Camilla Baratto; Adalgisa Sinicropi; Verónica Sáez-Jiménez; Cristina Coscolín; Antonio Romero; Francisco Javier Medrano; Francisco J Ruiz-Dueñas; Angel T Martínez
Journal:  Biochem J       Date:  2015-03-01       Impact factor: 3.857

9.  Reducing biomass recalcitrance by heterologous expression of a bacterial peroxidase in tobacco (Nicotiana benthamiana).

Authors:  Ayalew Ligaba-Osena; Bertrand Hankoua; Kay DiMarco; Robert Pace; Mark Crocker; Jesse McAtee; Nivedita Nagachar; Ming Tien; Tom L Richard
Journal:  Sci Rep       Date:  2017-12-06       Impact factor: 4.379

10.  First Dye-Decolorizing Peroxidase from an Ascomycetous Fungus Secreted by Xylaria grammica.

Authors:  Virginia Kimani; René Ullrich; Enrico Büttner; Robert Herzog; Harald Kellner; Nico Jehmlich; Martin Hofrichter; Christiane Liers
Journal:  Biomolecules       Date:  2021-09-21
  10 in total

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