Literature DB >> 24202669

Characterization of the nuclear ribosomal DNA units and phylogeny of Beta L. wild forms and cultivated beets.

S Santoni1, A Bervillé.   

Abstract

The nuclear rDNA units of species belonging to the genus Beta were characterized using heterologous probes of flax (entire unit and 25S) and sunflower (6.1-kb Eco fragment containing the 18S, the entire intergenic spacer (IGS) and a small piece of the 25S). The physical maps of one species from each section of the genus was constructed by localization of the EcoRI, BamHI, HindIII, KpnI and SacI restriction sites. For each species a single individual was used to obtain total DNA. The major unit length is 11 kb, but variant length units at 10.4, 10.7 and 11.3 kb were found as minor forms. However, some individuals carried the 10.4-kb or the 10.7-kb variant length unit as the major form. For the variant length units of one species the restriction sites were conserved, so that the variation in length occurred in the IGS. The EcoRI fragment corresponding to the intergenic spacer appeared to be the best indicator of variation. The variable sequence in the IGS sometimes generated new restriction sites for the Corollinae and mainly, did so, for the Vulgares relative to the Procumbentes. The variable sites were able, to differentiate the three sections and species within the sections. Corollinae species belong to two different groups according to the absence or the presence of the BamHI (B4) site. The Vulgares species contain several unit types. We proposed that all the unit types derived from a unique unit, V-11-2.3, by unequal crossing-overs or conversion. We also supposed a homogenization mechanism because we found individuals homogeneous for every unit type. Among the cultivated beets, all the root beets contain only one rDNA unit type, V-11-2.9. Thus, we supposed that the common unit type of cultivated beets either brings a physiological advantage or is strictly linked to a favorable allele. It is likely that the rDNA unit of B. maritima were eliminated from sugar beet by the breeding process since they were not recovered. Whatever the process, we deduced that all the cultivated forms of beets likely originated in a unique plant ascendant.A phylogenic tree of the genus is proposed, based on the nuclear rDNA maps, and subsequently discussed relative to the systematic tree and other molecular phylogenies.

Entities:  

Year:  1992        PMID: 24202669     DOI: 10.1007/BF00226896

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  16 in total

1.  Rapid control of purity for the cytoplasm of male-sterile seed stocks by means of a dot hybridization assay.

Authors:  S Santoni; P Faivre-Rampant; E Moreau; A Bervillé
Journal:  Mol Cell Probes       Date:  1991-02       Impact factor: 2.365

2.  Detection of specific sequences among DNA fragments separated by gel electrophoresis.

Authors:  E M Southern
Journal:  J Mol Biol       Date:  1975-11-05       Impact factor: 5.469

3.  Ribosomal RNA genes in plants: variability in copy number and in the intergenic spacer.

Authors:  S O Rogers; A J Bendich
Journal:  Plant Mol Biol       Date:  1987-09       Impact factor: 4.076

4.  Comparative restriction endonuclease analysis and molecular cloning of plastid DNAs from wild species and cultivated varieties of the genus Beta (L.).

Authors:  K Fritzsche; M Metzlaff; R Melzer; R Hagemann
Journal:  Theor Appl Genet       Date:  1987-09       Impact factor: 5.699

5.  Variation in the ribosomal DNA intergenic spacer of a maize population mass-selected for high grain yield.

Authors:  T R Rocheford; J C Osterman; C O Gardner
Journal:  Theor Appl Genet       Date:  1990-06       Impact factor: 5.699

6.  Mathematical model for studying genetic variation in terms of restriction endonucleases.

Authors:  M Nei; W H Li
Journal:  Proc Natl Acad Sci U S A       Date:  1979-10       Impact factor: 11.205

7.  Molecular drive: a cohesive mode of species evolution.

Authors:  G Dover
Journal:  Nature       Date:  1982-09-09       Impact factor: 49.962

8.  Use of restriction fragment length polymorphism to fingerprint beets at the genotype and species levels.

Authors:  T Nagamine; G A Todd; K P McCann; H J Newbury; B V Ford-Lloyd
Journal:  Theor Appl Genet       Date:  1989-12       Impact factor: 5.699

9.  Characterisation of the genes for ribosomal RNA in flax.

Authors:  P B Goldsbrough; C A Cullis
Journal:  Nucleic Acids Res       Date:  1981-03-25       Impact factor: 16.971

10.  The wheat ribosomal DNA spacer region: Its structure and variation in populations and among species.

Authors:  R Appels; J Dvořák
Journal:  Theor Appl Genet       Date:  1982-12       Impact factor: 5.699

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  11 in total

1.  Organization, instability and evolution of plant disease resistance genes.

Authors:  J L Bennetzen; S H Hulbert
Journal:  Plant Mol Biol       Date:  1992-11       Impact factor: 4.076

2.  Mitochondrial gene variation and phylogenetic relationships in the genus Beta.

Authors:  M Senda; Y Onodera; T Kinoshita; T Mikami
Journal:  Theor Appl Genet       Date:  1995-06       Impact factor: 5.699

3.  Enzyme and storage protein electrophoresis in varietal identification of sugar beet.

Authors:  M Oleo; J P Van Geyt; M Jacobs
Journal:  Theor Appl Genet       Date:  1992-11       Impact factor: 5.699

4.  Restriction site and length polymorphism of the rDNA unit in the cultivated basidiomycetePleurotus cornucopiae.

Authors:  B Iraçabal; J Labarère
Journal:  Theor Appl Genet       Date:  1994-08       Impact factor: 5.699

5.  Two different satellite DNAs in Beta vulgaris L.: evolution, quantification and distribution in the genus.

Authors:  S Santoni; A Bervillé
Journal:  Theor Appl Genet       Date:  1992-09       Impact factor: 5.699

6.  Ribosomal DNA repeat unit polymorphism in 49 Vicia species.

Authors:  S N Raina; Y Ogihara
Journal:  Theor Appl Genet       Date:  1995-03       Impact factor: 5.699

7.  Phylogenetic relationships between cultivated and wild species of the genusBeta revealed by DNA "fingerprinting".

Authors:  C Jung; K Pillen; L Frese; S Fähr; A E Melchinger
Journal:  Theor Appl Genet       Date:  1993-05       Impact factor: 5.699

8.  Organization of nuclear ribosomal DNA and species-specific polymorphism in closely related Fraxinus excelsior and F. oxyphylla.

Authors:  G Jeandroz; F Faivre-Rampant; A Pugin; J Bousquet; A Bervillé
Journal:  Theor Appl Genet       Date:  1995-11       Impact factor: 5.699

9.  Cloning and analysis of a 6.8-kb rDNA intergenic spacer region of the European ash (Fraxinus excelsior L.).

Authors:  S Jeandroz; A Pugin; A Bervillé
Journal:  Theor Appl Genet       Date:  1996-06       Impact factor: 5.699

10.  Intra-individual heterogeneity of rDNA allows the distinction between two closely related species in the Genus Helianthus.

Authors:  T Cuéllar; J L Bella; E Beihassen
Journal:  Theor Appl Genet       Date:  1996-10       Impact factor: 5.699

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